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Literature DB >> 26876599

Challenges in RNA Structural Modeling and Design.

Anna Marie Pyle¹, Tamar Schlick².

Abstract

Entities: Chemical Disease Gene

Mesh：

Substances：
RNA

Year: 2016 PMID： 26876599 PMCID： PMC4830135 DOI： 10.1016/j.jmb.2016.02.012

Source DB: PubMed Journal: J Mol Biol ISSN： 0022-2836 Impact factor: 5.469

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9 in total

1. Protein Structure Is Related to RNA Structural Reactivity In Vivo.

Authors: Yin Tang; Sarah M Assmann; Philip C Bevilacqua
Journal: J Mol Biol Date: 2015-11-17 Impact factor: 5.469

Review 2. Modeling Three-Dimensional Structural Motifs of Viral IRES.

Authors: Gloria Lozano; Noemi Fernandez; Encarnacion Martinez-Salas
Journal: J Mol Biol Date: 2016-01-14 Impact factor: 5.469

3. Principles for Predicting RNA Secondary Structure Design Difficulty.

Authors: Jeff Anderson-Lee; Eli Fisker; Vineet Kosaraju; Michelle Wu; Justin Kong; Jeehyung Lee; Minjae Lee; Mathew Zada; Adrien Treuille; Rhiju Das
Journal: J Mol Biol Date: 2016-02-17 Impact factor: 5.469

4. Predicting Large RNA-Like Topologies by a Knowledge-Based Clustering Approach.

Authors: Naoto Baba; Shereef Elmetwaly; Namhee Kim; Tamar Schlick
Journal: J Mol Biol Date: 2015-10-22 Impact factor: 5.469

Review 5. Ribosome Mechanics Informs about Mechanism.

Authors: Michael T Zimmermann; Kejue Jia; Robert L Jernigan
Journal: J Mol Biol Date: 2015-12-11 Impact factor: 5.469

6. Structural Analysis of Multi-Helical RNAs by NMR-SAXS/WAXS: Application to the U4/U6 di-snRNA.

Authors: Gabriel Cornilescu; Allison L Didychuk; Margaret L Rodgers; Lauren A Michael; Jordan E Burke; Eric J Montemayor; Aaron A Hoskins; Samuel E Butcher
Journal: J Mol Biol Date: 2015-12-02 Impact factor: 5.469

7. N(6)-Methyladenosine Modification in a Long Noncoding RNA Hairpin Predisposes Its Conformation to Protein Binding.

Authors: Katherine I Zhou; Marc Parisien; Qing Dai; Nian Liu; Luda Diatchenko; Joseph R Sachleben; Tao Pan
Journal: J Mol Biol Date: 2015-09-04 Impact factor: 5.469

Review 8. Progress and Current Challenges in Modeling Large RNAs.

Authors: Srinivas Somarowthu
Journal: J Mol Biol Date: 2015-11-14 Impact factor: 5.469

Review 9. The Kink Turn, a Key Architectural Element in RNA Structure.

Authors: Lin Huang; David M J Lilley
Journal: J Mol Biol Date: 2015-10-29 Impact factor: 5.469

9 in total

11 in total

1. Inverse folding with RNA-As-Graphs produces a large pool of candidate sequences with target topologies.

Authors: Swati Jain; Yunwen Tao; Tamar Schlick
Journal: J Struct Biol Date: 2019-12-23 Impact factor: 2.867

2. Opportunities and Challenges in RNA Structural Modeling and Design.

Authors: Tamar Schlick; Anna Marie Pyle
Journal: Biophys J Date: 2017-02-02 Impact factor: 4.033

3. An extended dual graph library and partitioning algorithm applicable to pseudoknotted RNA structures.

Authors: Swati Jain; Sera Saju; Louis Petingi; Tamar Schlick
Journal: Methods Date: 2019-03-27 Impact factor: 3.608

4. F-RAG: Generating Atomic Coordinates from RNA Graphs by Fragment Assembly.

Authors: Swati Jain; Tamar Schlick
Journal: J Mol Biol Date: 2017-10-05 Impact factor: 5.469

5. Biomolecular Modeling and Simulation: A Prospering Multidisciplinary Field.

Authors: Tamar Schlick; Stephanie Portillo-Ledesma; Christopher G Myers; Lauren Beljak; Justin Chen; Sami Dakhel; Daniel Darling; Sayak Ghosh; Joseph Hall; Mikaeel Jan; Emily Liang; Sera Saju; Mackenzie Vohr; Chris Wu; Yifan Xu; Eva Xue
Journal: Annu Rev Biophys Date: 2021-02-19 Impact factor: 12.981