Literature DB >> 26870597

Crystal structure of 7,8,9,10-tetra-hydro-benzo[b]naphtho-[2,1-d]furan.

Zhongyuan Wu1, Manfred T Reetz1, Klaus Harms2.   

Abstract

In the title compound, C16H14O, the cyclo-hexene ring has a half-chair conformation. The mean plane, calculated through all non-H atoms of the mol-ecule, except for the central CH2 atoms of the cyclo-hexene ring, which deviate by 0.340 (3) and -0.369 (3) Å from this mean plane, has an r.m.s. deviation of 0.012 Å. In the crystal, there are C-H⋯π contacts present, resulting in the formation of zigzag chains propagating along the [010] direction.

Entities:  

Keywords:  C—H⋯π inter­actions; Diels–Alder reaction; Friedel–Crafts reaction; crystal structure; furan; tetra­hydro­benzo­naphtho­furan

Year:  2016        PMID: 26870597      PMCID: PMC4704761          DOI: 10.1107/S2056989015024512

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

The inter­action of Lewis acids with 1-naphthol 1 can be expected to induce metal coordination at the hy­droxy function with concomitant increase in Brønsted-acidity (2) (Yamamoto & Futatsugi, 2005 ▸; Goering, 1995 ▸). It is conceivable that the proton, once released from this inter­mediate 2, adds reversibly to the 4-position with formation of adduct 3, which is the Lewis acid coordinated form of the keto-tautomer of 1. Even if only minute amounts of 3 were to be formed, this inter­mediate should be a highly reactive dienophile in Diels–Alder reactions with such dienes as cyclo­hexa­diene 4 leading to adduct 5 (see Scheme). Such a transformation implies de-aromatization of 1-naphthol 1. Alternatively, protonation of diene 4 leading to carbocation 6 would set the stage for Friedel–Crafts reaction with formation of the alkyl­ation product 7, which could continue to react acid catalyzed, leading to adduct 8 and possibly to the aromatized furan product 9. In a previous study, Novák and coworkers reported the reaction of 1 with 4 in the presence of TsOH·H2O in boiling toluene (26 h) or at room temperature (7 d), furan derivative 9 being formed in 58% yield, presumably via the inter­mediacy of 7 and 8 (Orovecz et al., 2003 ▸; Novák et al., 2000 ▸). In exploratory experiments, we tested Et2O·BF3, FeCl3, TiCl4 and ZrCl4 as Lewis acids in the reaction of 1 and 4 at room temperature in CH2Cl2. Essentially only products derived from formal Friedel–Crafts alkyl­ation were identified following column chromatographic separation. Small amounts of unidentified compounds which could not be separated were also formed. A general protocol is provided. If a 2.5-fold excess of cyclo­hexa­diene 4 is used in these reactions, only small amounts of Friedel–Crafts products are formed (3–4%). Rather, acid-mediated oligomerization of diene 4 occurs. In contrast to the acidic conditions employed by Novák and coworkers, using the present protocol we isolated compound 8 and characterized it for the first time. We report herein on the crystal structure of the final product, furan 9.

Structural commentary

In the title compound 9, illustrated in Fig. 1 ▸, the cyclo­hexene ring (C1–C6) has a half-chair conformation. The mean plane, calculated through all non-hydrogen atoms of the mol­ecule (O1/C1/C2/C5–C16), except atoms C3 and C4 of the cyclo­hexene ring that deviate by 0.340 (3) and −0.369 (3) Å from this mean plane, has an r.m.s. deviation of 0.012 Å. The other C and O atoms lie in this mean plane with a maximum deviation of −0.051 (3) Å for atom C2.
Figure 1

The mol­ecular structure of compound 9, showing the atom labelling. Displacement ellipsoids are drawn at the 50% probability level.

Supra­molecular features

In the crystal of 9, there are C—H⋯π contacts present (Table 1 ▸ and Fig. 2 ▸), but no classical hydrogen bonds and no π–π inter­actions present. Inter­molecular contacts thus appear to be limited to van der Waals inter­actions. The two rather short inter­molecular C—H⋯ring centroid distances are: H5B⋯centroid of ring (C10C15) = 2.69 Å, H8⋯centroid of ring (C7–C10/C15/C16) = 2.93 Å. These inter­actions result in the formation of zigzag chains propagating along the b-axis direction.
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 and Cg4 are the centroids of rings C7–C10/C15/C16 and C10–C15, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
C5—H5BCg4i 0.992.693.664 (3)167
C8—H8⋯Cg3i 0.952.933.650 (3)134

Symmetry code: (i) .

Figure 2

A view of the nearest C—H⋯ring centroid distances, shown as dashed lines [see Table 1 ▸; symmetry code: (i) −x, −y + 2, z − ].

Database survey

Only one structure of a tetra­hydro­benzo­naphtho­furan (Refcode PEBDAD; Scully & Porco, 2012 ▸) is present in the current version 5.36 of the CSD (Groom & Allen, 2014 ▸), and the cyclo­hexene ring also has a half-chair conformation.

Synthesis and crystallization

General Procedure: To a mixture of 1-naphthol (6.48 g, 45 mmol), catalyst (2.25 mmol) in CH2Cl2 (10 ml), 1,3-cyclo­hexa­diene (0.7 ml, 22.5 mmol) in CH2Cl2 (30 ml) was added drop wise, and the resulting solution was stirred at 273 K for 5 h. After completion of the reaction (TLC) at room temperature, a cold aqueous solution of NaHCO3 (5%, 20 ml) was added and the mixture was extracted with CH2Cl2 (3 × 10 ml). The organic extracts were washed with water (2 ×10 mL) and dried over anhydrous Na2SO4, and concentrated in vacuum. The crude product was purified by silica column chromatography (petroleum ether) to give the desired product, which was identified by NMR spectroscopic comparison with authentic samples of 1, 2 and by X-ray diffraction analysis (Fig. 1 ▸). Compound 8: 1H NMR (300 MHz, CDCl3, p.p.m.): δ 1.19–1.27 (m, 1H), 1.34–1.48 (m, 4H), 1.69–1.84 (m, 2H), 1.92–2.02 (m, 1H), 3.17–3.24 (m, 1H), 4.71--4.77 (m, 1H), 7.16–7.18 (m, 1H), 7.24–7.32 (m, 3H), 7.66–7.69 (m, 1H), 7.87–7.90 (m, 1H); 13C NMR (300 MHz, CDCl3, p.p.m.): δ 20.50, 21.86, 27.64, 28.38, 41.41, 83.44, 120.16, 121.16, 121.60, 121.92, 125.13, 125.48, 126.55, 128.01, 134.11, 155.07. High Resolution Mass Spectrum: (M + H+) calculated for C16H16O 225.1274; found (M + H+) 225.1275.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. H atoms were located in difference Fourier maps, but subsequently included in the refinement using a riding model: C–H = 0.95-0.99 Å with U iso(H) = 1.2U eq(C).
Table 2

Experimental details

Crystal data
Chemical formulaC16H14O
M r 222.27
Crystal system, space groupOrthorhombic, P n a21
Temperature (K)100
a, b, c (Å)13.8369 (9), 12.2202 (8), 6.8468 (4)
V3)1157.72 (13)
Z 4
Radiation typeMo Kα
μ (mm−1)0.08
Crystal size (mm)0.16 × 0.05 × 0.04
 
Data collection
DiffractometerBruker D8 QUEST area detector
Absorption correctionMulti-scan (SADABS; Bruker, 2014)
T min, T max 0.94, 1.00
No. of measured, independent and observed [I > 2σ(I)] reflections5983, 2024, 1808
R int 0.038
(sin θ/λ)max−1)0.601
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.038, 0.081, 1.09
No. of reflections2024
No. of parameters154
No. of restraints1
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.16, −0.24

Computer programs: APEX2 and SAINT (Bruker, 2014 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL (Sheldrick, 2015b ▸), DIAMOND (Brandenburg, 2006 ▸), publCIF (Westrip, 2010 ▸) and PLATON (Spek, 2009 ▸).

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015024512/su5264sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015024512/su5264Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015024512/su5264Isup3.cml CCDC reference: 1429774 Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H14ODx = 1.275 Mg m3
Mr = 222.27Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, Pna21Cell parameters from 2867 reflections
a = 13.8369 (9) Åθ = 2.2–25.2°
b = 12.2202 (8) ŵ = 0.08 mm1
c = 6.8468 (4) ÅT = 100 K
V = 1157.72 (13) Å3Prism, colourless
Z = 40.16 × 0.05 × 0.04 mm
F(000) = 472
Bruker D8 QUEST area-detector diffractometer2024 independent reflections
Radiation source: microfocus sealed X-ray tube1808 reflections with I > 2σ(I)
Detector resolution: 7.9 pixels mm-1Rint = 0.038
ω and φ scansθmax = 25.3°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2014)h = −16→16
Tmin = 0.94, Tmax = 1.00k = −14→14
5983 measured reflectionsl = −8→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.081H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0435P)2 + 0.0066P] where P = (Fo2 + 2Fc2)/3
2024 reflections(Δ/σ)max < 0.001
154 parametersΔρmax = 0.16 e Å3
1 restraintΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.03747 (16)0.7566 (2)0.3738 (4)0.0159 (5)
O10.09729 (11)0.83253 (13)0.4640 (2)0.0165 (4)
C20.00207 (19)0.6599 (2)0.4844 (4)0.0207 (6)
H2A−0.04920.68220.57700.025*
H2B0.05570.62670.55960.025*
C3−0.03802 (19)0.5773 (2)0.3369 (4)0.0237 (6)
H3A−0.07670.52150.40700.028*
H3B0.01640.53950.27160.028*
C4−0.10145 (19)0.6329 (2)0.1823 (4)0.0232 (6)
H4A−0.13000.57630.09640.028*
H4B−0.15510.67190.24800.028*
C5−0.04412 (18)0.7140 (2)0.0581 (4)0.0179 (6)
H5A−0.00360.6738−0.03690.021*
H5B−0.08910.7616−0.01560.021*
C60.01857 (16)0.78260 (19)0.1870 (4)0.0138 (5)
C70.06900 (16)0.8841 (2)0.1498 (3)0.0137 (5)
C80.07806 (17)0.9549 (2)−0.0120 (4)0.0165 (6)
H80.04750.9381−0.13260.020*
C90.13190 (18)1.0484 (2)0.0084 (4)0.0187 (6)
H90.13711.0973−0.09910.022*
C100.18051 (17)1.07448 (19)0.1866 (4)0.0171 (6)
C110.23745 (18)1.1700 (2)0.2054 (4)0.0215 (6)
H110.24411.21790.09690.026*
C120.28309 (18)1.1947 (2)0.3768 (4)0.0243 (7)
H120.32091.25930.38620.029*
C130.27444 (18)1.1254 (2)0.5383 (4)0.0234 (6)
H130.30601.14380.65710.028*
C140.22067 (17)1.0308 (2)0.5271 (4)0.0191 (6)
H140.21570.98370.63710.023*
C150.17295 (17)1.0040 (2)0.3507 (4)0.0151 (5)
C160.11541 (17)0.9100 (2)0.3225 (3)0.0141 (5)
U11U22U33U12U13U23
C10.0135 (11)0.0131 (13)0.0211 (13)−0.0013 (10)0.0009 (11)−0.0021 (11)
O10.0202 (8)0.0147 (9)0.0144 (8)−0.0019 (8)−0.0021 (7)0.0019 (7)
C20.0232 (13)0.0180 (14)0.0210 (14)−0.0019 (11)0.0019 (12)0.0042 (12)
C30.0263 (14)0.0171 (14)0.0277 (14)−0.0048 (12)0.0018 (13)0.0035 (12)
C40.0197 (13)0.0213 (15)0.0286 (15)−0.0056 (12)−0.0006 (12)−0.0007 (13)
C50.0164 (12)0.0169 (14)0.0203 (13)−0.0010 (11)−0.0023 (11)−0.0023 (12)
C60.0126 (11)0.0128 (13)0.0159 (12)0.0037 (10)0.0024 (10)−0.0007 (11)
C70.0119 (12)0.0132 (13)0.0158 (12)0.0041 (10)0.0022 (11)−0.0027 (11)
C80.0185 (12)0.0172 (14)0.0140 (12)0.0036 (11)−0.0010 (11)−0.0012 (11)
C90.0200 (12)0.0174 (13)0.0186 (13)0.0036 (11)0.0040 (11)0.0030 (12)
C100.0127 (11)0.0153 (13)0.0233 (14)0.0024 (10)0.0046 (11)−0.0019 (12)
C110.0168 (13)0.0174 (15)0.0303 (15)0.0005 (11)0.0056 (13)0.0015 (13)
C120.0140 (12)0.0199 (15)0.0391 (17)−0.0041 (11)0.0037 (13)−0.0069 (14)
C130.0167 (12)0.0257 (16)0.0278 (15)−0.0006 (12)−0.0023 (12)−0.0106 (14)
C140.0149 (12)0.0209 (14)0.0216 (13)0.0012 (11)0.0002 (11)−0.0020 (13)
C150.0115 (11)0.0159 (13)0.0180 (12)0.0020 (10)0.0021 (10)−0.0026 (11)
C160.0155 (12)0.0117 (13)0.0152 (13)0.0035 (10)0.0039 (11)0.0003 (11)
C1—C61.343 (3)C7—C161.383 (3)
C1—O11.388 (3)C7—C81.411 (3)
C1—C21.486 (3)C8—C91.371 (3)
O1—C161.377 (3)C8—H80.9500
C2—C31.532 (4)C9—C101.429 (4)
C2—H2A0.9900C9—H90.9500
C2—H2B0.9900C10—C111.414 (4)
C3—C41.534 (4)C10—C151.419 (3)
C3—H3A0.9900C11—C121.366 (4)
C3—H3B0.9900C11—H110.9500
C4—C51.528 (4)C12—C131.398 (4)
C4—H4A0.9900C12—H120.9500
C4—H4B0.9900C13—C141.377 (3)
C5—C61.494 (3)C13—H130.9500
C5—H5A0.9900C14—C151.415 (4)
C5—H5B0.9900C14—H140.9500
C6—C71.446 (3)C15—C161.411 (3)
C6—C1—O1112.4 (2)C16—C7—C8119.4 (2)
C6—C1—C2127.5 (2)C16—C7—C6105.6 (2)
O1—C1—C2120.1 (2)C8—C7—C6135.0 (2)
C16—O1—C1104.80 (18)C9—C8—C7118.6 (2)
C1—C2—C3107.9 (2)C9—C8—H8120.7
C1—C2—H2A110.1C7—C8—H8120.7
C3—C2—H2A110.1C8—C9—C10121.9 (2)
C1—C2—H2B110.1C8—C9—H9119.1
C3—C2—H2B110.1C10—C9—H9119.1
H2A—C2—H2B108.4C11—C10—C15118.0 (2)
C2—C3—C4111.7 (2)C11—C10—C9121.6 (2)
C2—C3—H3A109.3C15—C10—C9120.4 (2)
C4—C3—H3A109.3C12—C11—C10121.2 (3)
C2—C3—H3B109.3C12—C11—H11119.4
C4—C3—H3B109.3C10—C11—H11119.4
H3A—C3—H3B107.9C11—C12—C13120.4 (2)
C5—C4—C3112.0 (2)C11—C12—H12119.8
C5—C4—H4A109.2C13—C12—H12119.8
C3—C4—H4A109.2C14—C13—C12120.7 (3)
C5—C4—H4B109.2C14—C13—H13119.6
C3—C4—H4B109.2C12—C13—H13119.6
H4A—C4—H4B107.9C13—C14—C15119.6 (2)
C6—C5—C4109.7 (2)C13—C14—H14120.2
C6—C5—H5A109.7C15—C14—H14120.2
C4—C5—H5A109.7C16—C15—C14124.6 (2)
C6—C5—H5B109.7C16—C15—C10115.3 (2)
C4—C5—H5B109.7C14—C15—C10120.1 (2)
H5A—C5—H5B108.2O1—C16—C7111.1 (2)
C1—C6—C7106.1 (2)O1—C16—C15124.5 (2)
C1—C6—C5122.8 (2)C7—C16—C15124.4 (2)
C7—C6—C5131.1 (2)
C6—C1—O1—C160.3 (2)C15—C10—C11—C12−0.7 (4)
C2—C1—O1—C16−179.7 (2)C9—C10—C11—C12179.5 (2)
C6—C1—C2—C315.0 (3)C10—C11—C12—C130.1 (4)
O1—C1—C2—C3−165.0 (2)C11—C12—C13—C140.6 (4)
C1—C2—C3—C4−44.6 (3)C12—C13—C14—C15−0.6 (4)
C2—C3—C4—C563.3 (3)C13—C14—C15—C16−179.5 (2)
C3—C4—C5—C6−45.0 (3)C13—C14—C15—C10−0.1 (4)
O1—C1—C6—C7−0.5 (3)C11—C10—C15—C16−179.8 (2)
C2—C1—C6—C7179.5 (2)C9—C10—C15—C160.0 (3)
O1—C1—C6—C5−179.9 (2)C11—C10—C15—C140.7 (3)
C2—C1—C6—C50.0 (4)C9—C10—C15—C14−179.5 (2)
C4—C5—C6—C114.8 (3)C1—O1—C16—C70.0 (2)
C4—C5—C6—C7−164.5 (2)C1—O1—C16—C15179.4 (2)
C1—C6—C7—C160.4 (2)C8—C7—C16—O1179.21 (19)
C5—C6—C7—C16179.8 (2)C6—C7—C16—O1−0.2 (3)
C1—C6—C7—C8−178.9 (3)C8—C7—C16—C15−0.2 (3)
C5—C6—C7—C80.5 (4)C6—C7—C16—C15−179.6 (2)
C16—C7—C8—C9−0.9 (3)C14—C15—C16—O10.8 (4)
C6—C7—C8—C9178.4 (2)C10—C15—C16—O1−178.7 (2)
C7—C8—C9—C101.4 (3)C14—C15—C16—C7−179.9 (2)
C8—C9—C10—C11178.8 (2)C10—C15—C16—C70.6 (3)
C8—C9—C10—C15−1.0 (4)
D—H···AD—HH···AD···AD—H···A
C5—H5B···Cg4i0.992.693.664 (3)167
C8—H8···Cg3i0.952.933.650 (3)134
  6 in total

1.  "Designer acids": combined acid catalysis for asymmetric synthesis.

Authors:  Hisashi Yamamoto; Kentaro Futatsugi
Journal:  Angew Chem Int Ed Engl       Date:  2005-03-18       Impact factor: 15.336

2.  The Cambridge Structural Database in retrospect and prospect.

Authors:  Colin R Groom; Frank H Allen
Journal:  Angew Chem Int Ed Engl       Date:  2014-01-02       Impact factor: 15.336

3.  Studies toward the synthesis of the epoxykinamycin FL-120B': discovery of a decarbonylative photocyclization.

Authors:  Stephen S Scully; John A Porco
Journal:  Org Lett       Date:  2012-05-09       Impact factor: 6.005

4.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

5.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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