Literature DB >> 26870534

Crystal structure of 1-(2,4-di-nitro-phen-yl)-3,5-diphenyl-1H-pyrazole.

Shaaban K Mohamed1, Joel T Mague2, Mehmet Akkurt3, Mustafa R Albayati4, Alaa F Mohamed5.   

Abstract

In the title mol-ecule, C21H14N4O4, the phenyl rings make dihedral angles of 39.61 (8) and 9.4 (1)°, respectively, with the central pyrazole ring. The dihedral angle between the pyrazole and di-nitro-phenyl rings is 46.95 (5)°. In the crystal, mol-ecules pack in helical stacks parallel to the a axis aided by weak C-H⋯O inter-actions.

Entities:  

Keywords:  bio-active motifs; crystal structure; pyrazoles

Year:  2015        PMID: 26870534      PMCID: PMC4719887          DOI: 10.1107/S2056989015021350

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the synthesis and pharmaceutical activities of pyrazole-containing compounds, see: Szabó et al. (2008 ▸); Tanitame et al. (2005 ▸); Cottineau et al. (2002 ▸); Mokhtar & El-Khawass (1988 ▸); Rida et al. (2009 ▸); Abadi et al. (2003 ▸); Sharma et al. (2014 ▸); Mykhailiuk (2015 ▸).

Experimental

Crystal data

C21H14N4O4 M = 386.36 Orthorhombic, a = 7.2170 (5) Å b = 12.9467 (10) Å c = 19.3006 (14) Å V = 1803.4 (2) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 150 K 0.18 × 0.18 × 0.17 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2015 ▸) T min = 0.78, T max = 0.98 17283 measured reflections 4635 independent reflections 3401 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.096 S = 1.03 4635 reflections 262 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.17 e Å−3 Absolute structure: Flack x determined using 1193 quotients [(I +)−(I −)]/[(I +)+(I −)] (Parsons et al., 2013 ▸) Absolute structure parameter: −0.3 (8)

Data collection: APEX2 (Bruker, 2015 ▸); cell refinement: SAINT (Bruker, 2015 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXT (Sheldrick, 2015a ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b ▸); molecular graphics: DIAMOND (Brandenburg & Putz, 2012 ▸); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015021350/qm2114sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015021350/qm2114Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015021350/qm2114Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015021350/qm2114fig1.tif The title mol­ecule with the labeling scheme and 50% probability ellipsoids. Click here for additional data file. a . DOI: 10.1107/S2056989015021350/qm2114fig2.tif Packing viewed down the a axis with weak C—H⋯O inter­actions depicted as dotted lines. Click here for additional data file. b . DOI: 10.1107/S2056989015021350/qm2114fig3.tif Packing viewed down the b axis with weak C—H⋯O inter­actions depicted as dotted lines. CCDC reference: 1436135 Additional supporting information: crystallographic information; 3D view; checkCIF report
C21H14N4O4Dx = 1.423 Mg m3
Mr = 386.36Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 4944 reflections
a = 7.2170 (5) Åθ = 2.6–24.1°
b = 12.9467 (10) ŵ = 0.10 mm1
c = 19.3006 (14) ÅT = 150 K
V = 1803.4 (2) Å3Block, yellow-orange
Z = 40.18 × 0.18 × 0.17 mm
F(000) = 800
Bruker SMART APEX CCD diffractometer4635 independent reflections
Radiation source: fine-focus sealed tube3401 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.045
Detector resolution: 8.3333 pixels mm-1θmax = 29.1°, θmin = 1.9°
φ and ω scansh = −9→9
Absorption correction: multi-scan (SADABS; Bruker, 2015)k = −17→16
Tmin = 0.78, Tmax = 0.98l = −26→26
17283 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H-atom parameters constrained
wR(F2) = 0.096w = 1/[σ2(Fo2) + (0.0375P)2] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
4635 reflectionsΔρmax = 0.21 e Å3
262 parametersΔρmin = −0.17 e Å3
0 restraintsAbsolute structure: Flack x determined using 1193 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: −0.3 (8)
Experimental. The diffraction data were collected in three sets of 363 frames (0.5° width in ω) at φ = 0, 120 and 240°. A scan time of 40 sec/frame was used.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. H-atoms attached to carbon were placed in calculated positions (C—H = 0.95 Å). All were included as riding contributions with isotropic displacement parameters 1.2 times those of the attached atoms.
xyzUiso*/Ueq
O10.0335 (2)0.48865 (13)0.50537 (9)0.0369 (4)
O20.1081 (3)0.56459 (13)0.40944 (10)0.0466 (5)
O30.1707 (3)0.33782 (17)0.21292 (9)0.0617 (6)
O40.2274 (3)0.17545 (18)0.22859 (9)0.0625 (6)
N10.2445 (3)0.26495 (13)0.58248 (9)0.0280 (4)
N20.3024 (2)0.33719 (12)0.53522 (9)0.0261 (4)
N30.1040 (2)0.48950 (14)0.44764 (10)0.0319 (4)
N40.2043 (3)0.2633 (2)0.24971 (11)0.0464 (6)
C10.3782 (3)0.42265 (15)0.56610 (11)0.0268 (5)
C20.3640 (3)0.40575 (17)0.63603 (11)0.0284 (5)
H20.40210.45110.67200.034*
C30.2814 (3)0.30750 (17)0.64398 (11)0.0279 (5)
C40.4636 (3)0.50690 (16)0.52632 (11)0.0260 (5)
C50.5697 (3)0.48621 (18)0.46740 (12)0.0305 (5)
H50.59170.41670.45390.037*
C60.6430 (3)0.56641 (17)0.42857 (12)0.0334 (5)
H60.71230.55190.38790.040*
C70.6152 (3)0.66760 (18)0.44903 (13)0.0377 (6)
H70.66390.72260.42200.045*
C80.5167 (4)0.68884 (19)0.50876 (13)0.0379 (6)
H80.50100.75830.52350.045*
C90.4406 (3)0.60891 (17)0.54720 (12)0.0338 (5)
H90.37230.62390.58810.041*
C100.2384 (3)0.24957 (17)0.70755 (11)0.0297 (5)
C110.2507 (3)0.29519 (19)0.77262 (12)0.0377 (6)
H110.28660.36560.77640.045*
C120.2113 (4)0.2394 (2)0.83180 (13)0.0456 (7)
H120.22200.27150.87590.055*
C130.1569 (4)0.1382 (2)0.82749 (13)0.0459 (7)
H130.12950.10040.86840.055*
C140.1421 (4)0.0917 (2)0.76378 (14)0.0491 (7)
H140.10380.02170.76050.059*
C150.1830 (4)0.14687 (18)0.70429 (13)0.0413 (6)
H150.17310.11390.66050.050*
C160.2618 (3)0.31836 (16)0.46461 (10)0.0254 (4)
C170.1820 (3)0.39223 (16)0.42117 (11)0.0277 (5)
C180.1647 (3)0.37515 (18)0.35076 (12)0.0329 (5)
H180.11680.42710.32100.040*
C190.2188 (3)0.28098 (18)0.32499 (11)0.0328 (5)
C200.2869 (3)0.20328 (18)0.36702 (12)0.0332 (5)
H200.31710.13760.34820.040*
C210.3104 (3)0.22280 (16)0.43688 (11)0.0293 (5)
H210.36000.17070.46620.035*
U11U22U33U12U13U23
O10.0335 (9)0.0348 (10)0.0423 (10)0.0026 (7)0.0025 (8)0.0002 (8)
O20.0523 (11)0.0286 (9)0.0588 (11)0.0032 (8)−0.0003 (10)0.0159 (9)
O30.0703 (13)0.0840 (15)0.0308 (10)−0.0060 (12)−0.0092 (9)0.0152 (10)
O40.0708 (14)0.0772 (15)0.0394 (11)0.0100 (12)−0.0055 (10)−0.0219 (10)
N10.0297 (10)0.0279 (10)0.0264 (9)−0.0008 (8)−0.0002 (8)0.0051 (8)
N20.0293 (9)0.0228 (9)0.0261 (9)−0.0012 (8)−0.0007 (7)0.0017 (7)
N30.0264 (9)0.0276 (10)0.0418 (12)−0.0005 (8)−0.0052 (9)0.0052 (9)
N40.0402 (12)0.0702 (17)0.0289 (12)−0.0053 (12)−0.0022 (9)−0.0018 (12)
C10.0261 (11)0.0231 (11)0.0313 (12)0.0014 (9)−0.0008 (9)−0.0022 (9)
C20.0300 (11)0.0255 (11)0.0297 (11)−0.0004 (9)−0.0019 (10)−0.0021 (9)
C30.0276 (11)0.0303 (12)0.0256 (11)0.0037 (9)−0.0006 (9)−0.0009 (9)
C40.0235 (11)0.0260 (12)0.0286 (11)−0.0011 (9)−0.0032 (9)−0.0004 (9)
C50.0279 (12)0.0264 (12)0.0372 (13)0.0003 (9)−0.0004 (10)−0.0019 (10)
C60.0280 (12)0.0363 (13)0.0360 (13)−0.0027 (10)0.0023 (10)0.0017 (11)
C70.0347 (12)0.0318 (13)0.0467 (14)−0.0085 (10)−0.0016 (12)0.0058 (11)
C80.0421 (14)0.0253 (13)0.0462 (15)−0.0045 (11)−0.0027 (11)−0.0031 (11)
C90.0396 (13)0.0282 (12)0.0335 (12)−0.0011 (10)0.0005 (11)−0.0059 (11)
C100.0274 (11)0.0340 (13)0.0278 (11)0.0006 (10)−0.0014 (10)0.0005 (10)
C110.0420 (14)0.0382 (14)0.0329 (13)−0.0083 (11)0.0034 (11)−0.0026 (10)
C120.0544 (17)0.0531 (16)0.0293 (13)−0.0042 (14)0.0032 (12)−0.0003 (12)
C130.0553 (17)0.0519 (17)0.0304 (14)−0.0078 (14)0.0004 (12)0.0116 (12)
C140.0721 (19)0.0360 (15)0.0394 (14)−0.0103 (14)−0.0031 (14)0.0091 (12)
C150.0616 (16)0.0329 (13)0.0293 (12)−0.0054 (12)−0.0031 (12)0.0015 (10)
C160.0234 (10)0.0264 (11)0.0265 (11)−0.0034 (9)−0.0013 (9)0.0024 (9)
C170.0257 (11)0.0255 (11)0.0320 (12)−0.0043 (9)−0.0007 (9)0.0029 (10)
C180.0300 (12)0.0364 (13)0.0324 (12)−0.0055 (10)−0.0040 (10)0.0092 (10)
C190.0315 (12)0.0430 (14)0.0240 (11)−0.0077 (11)−0.0020 (10)0.0011 (10)
C200.0321 (12)0.0335 (13)0.0340 (13)−0.0033 (10)0.0014 (10)−0.0056 (10)
C210.0294 (12)0.0288 (12)0.0296 (12)−0.0015 (9)−0.0025 (9)0.0022 (9)
O1—N31.225 (2)C8—C91.387 (3)
O2—N31.220 (2)C8—H80.9500
O3—N41.222 (3)C9—H90.9500
O4—N41.220 (3)C10—C151.390 (3)
N1—C31.335 (3)C10—C111.391 (3)
N1—N21.372 (2)C11—C121.381 (3)
N2—C11.371 (3)C11—H110.9500
N2—C161.415 (3)C12—C131.371 (4)
N3—C171.471 (3)C12—H120.9500
N4—C191.475 (3)C13—C141.373 (4)
C1—C21.371 (3)C13—H130.9500
C1—C41.469 (3)C14—C151.384 (3)
C2—C31.413 (3)C14—H140.9500
C2—H20.9500C15—H150.9500
C3—C101.471 (3)C16—C211.393 (3)
C4—C91.391 (3)C16—C171.396 (3)
C4—C51.397 (3)C17—C181.382 (3)
C5—C61.385 (3)C18—C191.373 (3)
C5—H50.9500C18—H180.9500
C6—C71.383 (3)C19—C201.383 (3)
C6—H60.9500C20—C211.382 (3)
C7—C81.382 (3)C20—H200.9500
C7—H70.9500C21—H210.9500
C3—N1—N2104.42 (17)C15—C10—C11117.7 (2)
C1—N2—N1112.51 (17)C15—C10—C3120.71 (19)
C1—N2—C16129.82 (17)C11—C10—C3121.5 (2)
N1—N2—C16117.39 (16)C12—C11—C10120.8 (2)
O2—N3—O1124.5 (2)C12—C11—H11119.6
O2—N3—C17117.58 (19)C10—C11—H11119.6
O1—N3—C17117.85 (17)C13—C12—C11120.6 (2)
O4—N4—O3124.7 (2)C13—C12—H12119.7
O4—N4—C19117.7 (2)C11—C12—H12119.7
O3—N4—C19117.6 (2)C12—C13—C14119.7 (2)
N2—C1—C2105.63 (19)C12—C13—H13120.1
N2—C1—C4122.64 (19)C14—C13—H13120.1
C2—C1—C4131.6 (2)C13—C14—C15120.0 (2)
C1—C2—C3106.38 (19)C13—C14—H14120.0
C1—C2—H2126.8C15—C14—H14120.0
C3—C2—H2126.8C14—C15—C10121.2 (2)
N1—C3—C2111.04 (18)C14—C15—H15119.4
N1—C3—C10119.27 (18)C10—C15—H15119.4
C2—C3—C10129.68 (19)C21—C16—C17118.79 (19)
C9—C4—C5118.9 (2)C21—C16—N2118.11 (18)
C9—C4—C1120.2 (2)C17—C16—N2123.06 (18)
C5—C4—C1120.87 (19)C18—C17—C16121.2 (2)
C6—C5—C4120.4 (2)C18—C17—N3116.36 (19)
C6—C5—H5119.8C16—C17—N3122.39 (18)
C4—C5—H5119.8C19—C18—C17118.2 (2)
C7—C6—C5120.0 (2)C19—C18—H18120.9
C7—C6—H6120.0C17—C18—H18120.9
C5—C6—H6120.0C18—C19—C20122.3 (2)
C8—C7—C6120.1 (2)C18—C19—N4118.3 (2)
C8—C7—H7120.0C20—C19—N4119.4 (2)
C6—C7—H7120.0C21—C20—C19118.9 (2)
C7—C8—C9120.1 (2)C21—C20—H20120.6
C7—C8—H8120.0C19—C20—H20120.6
C9—C8—H8120.0C20—C21—C16120.4 (2)
C8—C9—C4120.4 (2)C20—C21—H21119.8
C8—C9—H9119.8C16—C21—H21119.8
C4—C9—H9119.8
C3—N1—N2—C11.4 (2)C11—C12—C13—C140.3 (4)
C3—N1—N2—C16−173.15 (17)C12—C13—C14—C150.3 (5)
N1—N2—C1—C2−1.6 (2)C13—C14—C15—C10−0.3 (4)
C16—N2—C1—C2172.1 (2)C11—C10—C15—C14−0.2 (4)
N1—N2—C1—C4174.98 (19)C3—C10—C15—C14−179.9 (3)
C16—N2—C1—C4−11.4 (3)C1—N2—C16—C21135.4 (2)
N2—C1—C2—C31.1 (2)N1—N2—C16—C21−51.2 (3)
C4—C1—C2—C3−175.0 (2)C1—N2—C16—C17−42.3 (3)
N2—N1—C3—C2−0.6 (2)N1—N2—C16—C17131.2 (2)
N2—N1—C3—C10−179.24 (18)C21—C16—C17—C18−5.3 (3)
C1—C2—C3—N1−0.3 (2)N2—C16—C17—C18172.3 (2)
C1—C2—C3—C10178.1 (2)C21—C16—C17—N3171.68 (19)
N2—C1—C4—C9142.0 (2)N2—C16—C17—N3−10.7 (3)
C2—C1—C4—C9−42.4 (4)O2—N3—C17—C18−32.5 (3)
N2—C1—C4—C5−38.4 (3)O1—N3—C17—C18144.9 (2)
C2—C1—C4—C5137.2 (3)O2—N3—C17—C16150.3 (2)
C9—C4—C5—C6−3.2 (3)O1—N3—C17—C16−32.3 (3)
C1—C4—C5—C6177.2 (2)C16—C17—C18—C193.6 (3)
C4—C5—C6—C71.6 (3)N3—C17—C18—C19−173.60 (19)
C5—C6—C7—C81.0 (4)C17—C18—C19—C200.8 (3)
C6—C7—C8—C9−2.0 (4)C17—C18—C19—N4−178.7 (2)
C7—C8—C9—C40.4 (4)O4—N4—C19—C18−169.8 (2)
C5—C4—C9—C82.2 (3)O3—N4—C19—C1810.5 (3)
C1—C4—C9—C8−178.2 (2)O4—N4—C19—C2010.6 (3)
N1—C3—C10—C158.4 (3)O3—N4—C19—C20−169.1 (2)
C2—C3—C10—C15−169.9 (2)C18—C19—C20—C21−3.4 (3)
N1—C3—C10—C11−171.3 (2)N4—C19—C20—C21176.2 (2)
C2—C3—C10—C1110.4 (4)C19—C20—C21—C161.6 (3)
C15—C10—C11—C120.8 (4)C17—C16—C21—C202.7 (3)
C3—C10—C11—C12−179.5 (2)N2—C16—C21—C20−175.03 (19)
C10—C11—C12—C13−0.8 (4)
D—H···AD—HH···AD···AD—H···A
C21—H21···O1i0.952.483.366 (3)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C21—H21⋯O1i 0.952.483.366 (3)156

Symmetry code: (i) .

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