| Literature DB >> 26870408 |
Yi Ren1, Semin Lee1, Jeffery A Bertke1, Jeffrey S Moore1.
Abstract
The crystal structure of the well-studied 9,10-bis-(1,3-di-thiol-2-yl-idene)-9,10-di-hydro-anthracene mol-ecule, C20H12S4, (I), also known as exTTF, is reported. The mol-ecular structure of (I) consists of a di-hydro-anthracene moiety with two 1,3-di-thiol-2-yl-idene substituents. This is a saddle-shaped mol-ecule, which inter-acts with a close neighbor through various π-π and C-H⋯π contacts to form a 'dimer'. These 'dimers' inter-act through a series of C-H⋯S and C-H⋯π contacts to construct a complex three-dimensional extended structure.Entities:
Keywords: TTF; Wittig–Horner reaction; crystal structure; exTTF; tetrathiafulvalene
Year: 2015 PMID: 26870408 PMCID: PMC4719817 DOI: 10.1107/S2056989015020800
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1(a) Plot showing 35% probability ellipsoids for non-H atoms and circles of arbitrary size for H atoms for (I). (b) A view of (I) showing the saddle shape of the molecule.
Figure 2A view of a ‘dimer’ of (I) showing (a) how the 1,3-dithiol-2-ylidene group of one molecule sits in the U-shape of a neighboring molecule, and (b) the interactions between the molecules that make up the ‘dimer’. Gray = Carbon, yellow = Sulfur, green = Hydrogen, blue dashed line = π–π interaction, red dashed line = C—H⋯π interaction. [Symmetry operation: (i) −x + 1, −y + 1, −z + 1.]
Figure 3A portion of the two-dimensional network formed between ‘dimers’ when only the dihydroanthracene CH interactions are taken into account viewed (a) along the a axis, and (b) along the b axis. Blue dashed lines are intra-dimer interactions and red dashed lines are dihydroanthracene CH inter-dimer interactions.
Figure 4A portion of the three-dimensional structure of (I), viewed along the b axis, showing the two-dimensional layers connecting along the a axis. Blue dashed lines are intra-dimer interactions, red dashed lines are dihydroanthracene CH inter-dimer interactions, and green dashed lines are 1,3-dithiol-2-ylidene CH inter-dimer interactions.
Figure 5The synthesis of (I).
Experimental details
| Crystal data | |
| Chemical formula | C20H12S4 |
|
| 380.54 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 11.2759 (3), 7.6073 (2), 19.5596 (5) |
| β (°) | 97.313 (1) |
|
| 1664.16 (8) |
|
| 4 |
| Radiation type | Cu |
| μ (mm−1) | 5.21 |
| Crystal size (mm) | 0.36 × 0.10 × 0.04 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Integration ( |
|
| 0.999, 1.000 |
| No. of measured, independent and observed [ | 25822, 3056, 2757 |
|
| 0.037 |
| Refinement | |
|
| 0.025, 0.061, 1.08 |
| No. of reflections | 3056 |
| No. of parameters | 218 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.25, −0.25 |
Computer programs: APEX2, SAINT (Bruker, 2014 ▸), XPREP and XCIF (Bruker, 2014 ▸), SHELXS2014 and SHELXTL (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), CrystalMaker (CrystalMaker, 1994 ▸), and publCIF (Westrip, 2010 ▸).
| C20H12S4 | |
| Monoclinic, | Cu |
| Cell parameters from 9948 reflections | |
| θ = 4.0–68.3° | |
| µ = 5.21 mm−1 | |
| β = 97.313 (1)° | |
| Needle, yellow | |
| 0.36 × 0.10 × 0.04 mm |
| Bruker APEXII CCD diffractometer | 3056 independent reflections |
| Radiation source: microfocus sealed tube | 2757 reflections with |
| Multilayer mirrors monochromator | |
| profile data from φ and ω scans | θmax = 68.4°, θmin = 4.0° |
| Absorption correction: integration ( | |
| 25822 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.25 e Å−3 | |
| 3056 reflections | Δρmin = −0.25 e Å−3 |
| 218 parameters | Extinction correction: |
| 0 restraints | Extinction coefficient: 0.00303 (14) |
| Experimental. One distinct cell was identified using |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Structure was phased by direct methods (Sheldrick, 2015). Systematic conditions
suggested the unambiguous space group. The space group choice was confirmed by
successful convergence of the full-matrix least-squares refinement on
|
| S1 | 0.50450 (3) | 0.25084 (5) | 0.52454 (2) | 0.01521 (11) | |
| S2 | 0.63047 (3) | 0.26765 (5) | 0.40288 (2) | 0.01627 (11) | |
| S3 | 0.06123 (3) | 0.70767 (5) | 0.35517 (2) | 0.01672 (11) | |
| S4 | 0.19863 (4) | 0.71272 (5) | 0.23764 (2) | 0.01788 (11) | |
| C1 | 0.64924 (14) | 0.3346 (2) | 0.53580 (9) | 0.0183 (3) | |
| H1 | 0.6861 | 0.3720 | 0.5798 | 0.022* | |
| C2 | 0.70600 (14) | 0.3442 (2) | 0.48073 (9) | 0.0195 (4) | |
| H2 | 0.7846 | 0.3908 | 0.4834 | 0.023* | |
| C3 | 0.49073 (14) | 0.24302 (19) | 0.43367 (8) | 0.0124 (3) | |
| C4 | 0.38454 (13) | 0.23077 (18) | 0.39233 (8) | 0.0117 (3) | |
| C5 | 0.26881 (13) | 0.22783 (19) | 0.41988 (8) | 0.0118 (3) | |
| C6 | 0.24960 (14) | 0.1319 (2) | 0.47833 (8) | 0.0150 (3) | |
| H6 | 0.3121 | 0.0610 | 0.5009 | 0.018* | |
| C7 | 0.14057 (14) | 0.1385 (2) | 0.50395 (8) | 0.0183 (3) | |
| H7 | 0.1295 | 0.0746 | 0.5444 | 0.022* | |
| C8 | 0.04781 (15) | 0.2381 (2) | 0.47066 (8) | 0.0189 (3) | |
| H8 | −0.0266 | 0.2435 | 0.4885 | 0.023* | |
| C9 | 0.06369 (14) | 0.3300 (2) | 0.41104 (8) | 0.0152 (3) | |
| H9 | −0.0010 | 0.3955 | 0.3877 | 0.018* | |
| C10 | 0.17326 (13) | 0.32754 (19) | 0.38499 (7) | 0.0119 (3) | |
| C11 | 0.19641 (13) | 0.42281 (19) | 0.32222 (7) | 0.0112 (3) | |
| C12 | 0.27915 (13) | 0.33216 (19) | 0.28095 (7) | 0.0114 (3) | |
| C13 | 0.26370 (13) | 0.3330 (2) | 0.20902 (8) | 0.0135 (3) | |
| H13 | 0.1987 | 0.3962 | 0.1849 | 0.016* | |
| C14 | 0.34196 (14) | 0.2427 (2) | 0.17217 (8) | 0.0163 (3) | |
| H14 | 0.3304 | 0.2443 | 0.1232 | 0.020* | |
| C15 | 0.43704 (14) | 0.1501 (2) | 0.20707 (8) | 0.0176 (3) | |
| H15 | 0.4917 | 0.0904 | 0.1820 | 0.021* | |
| C16 | 0.45236 (14) | 0.1447 (2) | 0.27850 (8) | 0.0154 (3) | |
| H16 | 0.5165 | 0.0786 | 0.3020 | 0.018* | |
| C17 | 0.37462 (13) | 0.23512 (19) | 0.31631 (8) | 0.0118 (3) | |
| C18 | 0.15426 (13) | 0.5873 (2) | 0.30614 (7) | 0.0127 (3) | |
| C19 | 0.08465 (15) | 0.9113 (2) | 0.31802 (9) | 0.0217 (4) | |
| H19 | 0.0541 | 1.0166 | 0.3352 | 0.026* | |
| C20 | 0.14664 (15) | 0.9132 (2) | 0.26496 (9) | 0.0226 (4) | |
| H20 | 0.1622 | 1.0200 | 0.2426 | 0.027* |
| S1 | 0.0144 (2) | 0.0198 (2) | 0.01084 (19) | 0.00031 (14) | −0.00078 (15) | −0.00062 (14) |
| S2 | 0.01037 (19) | 0.0225 (2) | 0.0160 (2) | 0.00129 (14) | 0.00170 (15) | 0.00215 (15) |
| S3 | 0.0145 (2) | 0.0149 (2) | 0.0206 (2) | 0.00404 (14) | 0.00183 (15) | −0.00264 (15) |
| S4 | 0.0217 (2) | 0.0146 (2) | 0.0173 (2) | 0.00085 (15) | 0.00232 (16) | 0.00485 (15) |
| C1 | 0.0149 (8) | 0.0181 (8) | 0.0203 (8) | 0.0026 (6) | −0.0042 (6) | −0.0033 (7) |
| C2 | 0.0129 (8) | 0.0186 (8) | 0.0252 (9) | 0.0005 (6) | −0.0043 (7) | −0.0007 (7) |
| C3 | 0.0132 (7) | 0.0113 (7) | 0.0129 (7) | 0.0022 (6) | 0.0034 (6) | 0.0008 (6) |
| C4 | 0.0132 (7) | 0.0088 (7) | 0.0133 (7) | 0.0017 (6) | 0.0015 (6) | 0.0011 (6) |
| C5 | 0.0126 (7) | 0.0101 (7) | 0.0127 (7) | −0.0020 (6) | 0.0015 (6) | −0.0031 (6) |
| C6 | 0.0163 (8) | 0.0141 (7) | 0.0142 (8) | −0.0006 (6) | 0.0005 (6) | 0.0004 (6) |
| C7 | 0.0206 (8) | 0.0210 (8) | 0.0137 (8) | −0.0052 (7) | 0.0038 (6) | 0.0032 (6) |
| C8 | 0.0160 (8) | 0.0234 (8) | 0.0188 (8) | −0.0024 (7) | 0.0079 (6) | −0.0009 (7) |
| C9 | 0.0131 (7) | 0.0158 (8) | 0.0168 (8) | 0.0000 (6) | 0.0016 (6) | −0.0017 (6) |
| C10 | 0.0138 (7) | 0.0112 (7) | 0.0103 (7) | −0.0023 (6) | 0.0004 (6) | −0.0023 (6) |
| C11 | 0.0086 (7) | 0.0134 (7) | 0.0112 (7) | −0.0010 (6) | −0.0005 (6) | −0.0013 (6) |
| C12 | 0.0112 (7) | 0.0103 (7) | 0.0128 (7) | −0.0030 (6) | 0.0018 (6) | −0.0003 (6) |
| C13 | 0.0124 (7) | 0.0143 (7) | 0.0137 (8) | −0.0020 (6) | 0.0004 (6) | 0.0006 (6) |
| C14 | 0.0189 (8) | 0.0193 (8) | 0.0108 (7) | −0.0031 (6) | 0.0024 (6) | −0.0016 (6) |
| C15 | 0.0187 (8) | 0.0186 (8) | 0.0166 (8) | 0.0012 (6) | 0.0066 (6) | −0.0053 (6) |
| C16 | 0.0137 (7) | 0.0149 (8) | 0.0176 (8) | 0.0020 (6) | 0.0019 (6) | −0.0011 (6) |
| C17 | 0.0117 (7) | 0.0110 (7) | 0.0125 (7) | −0.0021 (6) | 0.0013 (6) | −0.0004 (6) |
| C18 | 0.0102 (7) | 0.0159 (7) | 0.0113 (7) | −0.0007 (6) | −0.0014 (6) | −0.0008 (6) |
| C19 | 0.0195 (8) | 0.0126 (8) | 0.0311 (10) | 0.0023 (6) | −0.0046 (7) | −0.0020 (7) |
| C20 | 0.0239 (9) | 0.0114 (7) | 0.0299 (10) | −0.0005 (7) | −0.0064 (7) | 0.0026 (7) |
| S1—C1 | 1.7398 (16) | C8—C9 | 1.391 (2) |
| S1—C3 | 1.7654 (16) | C8—H8 | 0.9500 |
| S2—C2 | 1.7471 (16) | C9—C10 | 1.395 (2) |
| S2—C3 | 1.7670 (16) | C9—H9 | 0.9500 |
| S3—C19 | 1.7454 (17) | C10—C11 | 1.477 (2) |
| S3—C18 | 1.7647 (16) | C11—C18 | 1.361 (2) |
| S4—C20 | 1.7421 (17) | C11—C12 | 1.480 (2) |
| S4—C18 | 1.7680 (16) | C12—C13 | 1.396 (2) |
| C1—C2 | 1.323 (2) | C12—C17 | 1.412 (2) |
| C1—H1 | 0.9500 | C13—C14 | 1.390 (2) |
| C2—H2 | 0.9500 | C13—H13 | 0.9500 |
| C3—C4 | 1.360 (2) | C14—C15 | 1.387 (2) |
| C4—C5 | 1.474 (2) | C14—H14 | 0.9500 |
| C4—C17 | 1.477 (2) | C15—C16 | 1.386 (2) |
| C5—C6 | 1.396 (2) | C15—H15 | 0.9500 |
| C5—C10 | 1.419 (2) | C16—C17 | 1.398 (2) |
| C6—C7 | 1.386 (2) | C16—H16 | 0.9500 |
| C6—H6 | 0.9500 | C19—C20 | 1.323 (3) |
| C7—C8 | 1.385 (2) | C19—H19 | 0.9500 |
| C7—H7 | 0.9500 | C20—H20 | 0.9500 |
| C1—S1—C3 | 95.78 (8) | C9—C10—C11 | 123.73 (13) |
| C2—S2—C3 | 95.46 (8) | C5—C10—C11 | 117.26 (13) |
| C19—S3—C18 | 95.87 (8) | C18—C11—C10 | 123.34 (14) |
| C20—S4—C18 | 95.80 (8) | C18—C11—C12 | 121.89 (14) |
| C2—C1—S1 | 117.40 (12) | C10—C11—C12 | 114.52 (13) |
| C2—C1—H1 | 121.3 | C13—C12—C17 | 119.07 (14) |
| S1—C1—H1 | 121.3 | C13—C12—C11 | 122.78 (13) |
| C1—C2—S2 | 117.29 (13) | C17—C12—C11 | 118.10 (13) |
| C1—C2—H2 | 121.4 | C14—C13—C12 | 120.97 (14) |
| S2—C2—H2 | 121.4 | C14—C13—H13 | 119.5 |
| C4—C3—S1 | 123.98 (12) | C12—C13—H13 | 119.5 |
| C4—C3—S2 | 124.09 (12) | C15—C14—C13 | 119.83 (14) |
| S1—C3—S2 | 111.82 (8) | C15—C14—H14 | 120.1 |
| C3—C4—C5 | 122.49 (14) | C13—C14—H14 | 120.1 |
| C3—C4—C17 | 123.03 (14) | C16—C15—C14 | 120.03 (15) |
| C5—C4—C17 | 114.27 (13) | C16—C15—H15 | 120.0 |
| C6—C5—C10 | 119.05 (14) | C14—C15—H15 | 120.0 |
| C6—C5—C4 | 122.96 (13) | C15—C16—C17 | 120.83 (14) |
| C10—C5—C4 | 118.00 (13) | C15—C16—H16 | 119.6 |
| C7—C6—C5 | 120.94 (14) | C17—C16—H16 | 119.6 |
| C7—C6—H6 | 119.5 | C16—C17—C12 | 119.25 (14) |
| C5—C6—H6 | 119.5 | C16—C17—C4 | 123.32 (14) |
| C8—C7—C6 | 120.09 (15) | C12—C17—C4 | 117.40 (13) |
| C8—C7—H7 | 120.0 | C11—C18—S3 | 124.44 (12) |
| C6—C7—H7 | 120.0 | C11—C18—S4 | 123.16 (12) |
| C7—C8—C9 | 119.94 (15) | S3—C18—S4 | 112.16 (8) |
| C7—C8—H8 | 120.0 | C20—C19—S3 | 117.33 (13) |
| C9—C8—H8 | 120.0 | C20—C19—H19 | 121.3 |
| C8—C9—C10 | 120.92 (14) | S3—C19—H19 | 121.3 |
| C8—C9—H9 | 119.5 | C19—C20—S4 | 117.59 (13) |
| C10—C9—H9 | 119.5 | C19—C20—H20 | 121.2 |
| C9—C10—C5 | 119.01 (14) | S4—C20—H20 | 121.2 |
| C3—S1—C1—C2 | −8.09 (14) | C18—C11—C12—C13 | −43.5 (2) |
| S1—C1—C2—S2 | −1.21 (19) | C10—C11—C12—C13 | 142.00 (14) |
| C3—S2—C2—C1 | 9.82 (14) | C18—C11—C12—C17 | 139.23 (15) |
| C1—S1—C3—C4 | −162.04 (13) | C10—C11—C12—C17 | −35.31 (18) |
| C1—S1—C3—S2 | 14.06 (9) | C17—C12—C13—C14 | −1.2 (2) |
| C2—S2—C3—C4 | 161.58 (14) | C11—C12—C13—C14 | −178.48 (14) |
| C2—S2—C3—S1 | −14.51 (9) | C12—C13—C14—C15 | 0.0 (2) |
| S1—C3—C4—C5 | 1.8 (2) | C13—C14—C15—C16 | 1.4 (2) |
| S2—C3—C4—C5 | −173.83 (11) | C14—C15—C16—C17 | −1.6 (2) |
| S1—C3—C4—C17 | 176.22 (11) | C15—C16—C17—C12 | 0.3 (2) |
| S2—C3—C4—C17 | 0.6 (2) | C15—C16—C17—C4 | 178.43 (15) |
| C3—C4—C5—C6 | −41.9 (2) | C13—C12—C17—C16 | 1.0 (2) |
| C17—C4—C5—C6 | 143.19 (14) | C11—C12—C17—C16 | 178.43 (13) |
| C3—C4—C5—C10 | 138.06 (15) | C13—C12—C17—C4 | −177.19 (13) |
| C17—C4—C5—C10 | −36.82 (18) | C11—C12—C17—C4 | 0.2 (2) |
| C10—C5—C6—C7 | −2.6 (2) | C3—C4—C17—C16 | 42.7 (2) |
| C4—C5—C6—C7 | 177.45 (14) | C5—C4—C17—C16 | −142.47 (14) |
| C5—C6—C7—C8 | 1.5 (2) | C3—C4—C17—C12 | −139.19 (15) |
| C6—C7—C8—C9 | 0.7 (2) | C5—C4—C17—C12 | 35.66 (18) |
| C7—C8—C9—C10 | −1.7 (2) | C10—C11—C18—S3 | −2.8 (2) |
| C8—C9—C10—C5 | 0.6 (2) | C12—C11—C18—S3 | −176.84 (11) |
| C8—C9—C10—C11 | −179.69 (14) | C10—C11—C18—S4 | 171.04 (11) |
| C6—C5—C10—C9 | 1.5 (2) | C12—C11—C18—S4 | −3.0 (2) |
| C4—C5—C10—C9 | −178.52 (13) | C19—S3—C18—C11 | 163.72 (13) |
| C6—C5—C10—C11 | −178.22 (13) | C19—S3—C18—S4 | −10.70 (9) |
| C4—C5—C10—C11 | 1.8 (2) | C20—S4—C18—C11 | −163.82 (13) |
| C9—C10—C11—C18 | 40.0 (2) | C20—S4—C18—S3 | 10.68 (9) |
| C5—C10—C11—C18 | −140.37 (15) | C18—S3—C19—C20 | 6.74 (14) |
| C9—C10—C11—C12 | −145.59 (14) | S3—C19—C20—S4 | −0.06 (19) |
| C5—C10—C11—C12 | 34.08 (18) | C18—S4—C20—C19 | −6.65 (15) |