| Literature DB >> 26863316 |
Michal Feldman1, Israel Hershkovitz1, Ella H Sklan2, Gila Kahila Bar-Gal3, Ildikó Pap4, Ildikó Szikossy4, Rina Rosin-Arbesfeld2.
Abstract
Mutations of the Adenomatous polyposis coli (APC) gene are common and strongly associated with the development of colorectal adenomas and carcinomas. While extensively studied in modern populations, reports on visceral tumors in ancient populations are scarce. To the best of our knowledge, genetic characterization of mutations associated with colorectal cancer in ancient specimens has not yet been described. In this study we have sequenced hotspots for mutations in the APC gene isolated from 18th century naturally preserved human Hungarian mummies. While wild type APC sequences were found in two mummies, we discovered the E1317Q missense mutation, known to be a colorectal cancer predisposing mutation, in a large intestine tissue of an 18th century mummy. Our data suggests that this genetic predisposition to cancer already existed in the pre-industrialization era. This study calls for similar investigations of ancient specimens from different periods and geographical locations to be conducted and shared for the purpose of obtaining a larger scale analysis that will shed light on past cancer epidemiology and on cancer evolution.Entities:
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Year: 2016 PMID: 26863316 PMCID: PMC4749341 DOI: 10.1371/journal.pone.0147217
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
List of samples obtained from the Vác mummies.
| Mummy No./ Inventory No. | Name | Year of Death | Age at death | Samples description | Mitochondrial DNA preservation |
|---|---|---|---|---|---|
| 11/2009.19.11. | Beer Annamária | 1807 | 95 | Colon | - |
| 15/2009.19.15. | Fabó Dorottya | 1798 | 66 | Liver; colon | + |
| 18/2009.19.18. | Unknown | 1831 | NA | Back area | - |
| 21/2009.19.21. | Baranyai Alajos | 1806 | 11 | Liver | - |
| 28/2009.19.28. | Shöner Anna | 1793 | 55 | Chest | - |
| 44/2009.19.44. | Simon Antal | 1808 | 33 | Liver; colon | + |
| 51/2009.19.51. | Reihm Vencel | 1805 | 38 | Lung; Colon; Liver | + |
| 54/2009.19.54. | Nigrovits Anatal | 1803 | 22 | Liver; thorax | - |
| 63/2009.19.63. | Stéger Joachim | 1794 | 37 | Bottom; abdomen; liver area | + |
| 65/2009.19.65. | Sándor Terézia | 1783 | 40 | Colon; abdomen | + |
| 76/2009.19.76. | Schwartz Mária Terézia | 1784 | 10 | Lung; abdomen | - |
| 88/2009.19.88. | Unknown | 1770 | 50–60 | Colon; liver | + |
| 96/2009.19.96. | Unknown | 1798 | 20 | Testis; liver | - |
| 97/2009.19.97. | Tauber Antónia | 1786 | 37 | lungs; colon | + |
| 107/2009.19.107. | Unknown | NA | 50–89 | right bottom pelvis; colon; liver | + |
| 110/2009.19.110. | Skripetz Klára | 1788 | 18 | stomach | - |
| 116/2009.19.116. | Borsodi Terézia | 1794 | 26 | Colon; liver | + |
| 124/2009.19.124. | Hummer Anna Mária | 1774 | 50 | Stomach | - |
| 145/2009.19.145. | Praun István | NA | 30–34 | liver | - |
| 254/2009.19.254. | Vaizer Erzsébet | 1755 | 26 | left lung; right lung; liver; colon | + |
a Numbering and mummy name, age and year of death were kindly supplied by the Hungarian Natural History Museum.
b + positive for mitochondrial D-loop amplification–negative for mitochondrial D-loop amplification.
Primers in this study.
| Position in reference | Size of amplicon (bp) | Sequence (5’-3’) | Name | Reference |
|---|---|---|---|---|
| Mitochondrial (NC_012920.1) 16004–16275 | 271 | Forward: AGCACCCAAAGCTAAGATTC Reverse: CTTTGGAGTTGCAGTTGATG | Mt1 (L16004) | Faerman et al. 2000 [ |
| Mitochondrial (NC_012920.1) 16210–16442 | 232 | Forward: CCCATGCTTACAAGCAAGTA Reverse: ATTGATTTCACGGAGGATGG | Mt2 (L16210) | Faerman et al. 2000 [ |
| APC (NM_000038.5) 3956–4068 | 112 | Forward: CAGACGACACAGGAAGCAGA Reverse: GTGACACTGCTGGAACTTCG | APC1309 | Designed in this study |
| APC (NM_000038.5) 4377–4484 | 107 | Forward: TGCCACCAAGCAGAAGTAAA Reverse: TCCACTCTCTCTCTTTTCAGCA | APC1450 | Designed in this study |
Summary of APC sequences obtained from mummies.
| Mummy number | Sample type | Sequences obtained within the APC gene | Comparison to Reference sequence (NM_000038.5) |
|---|---|---|---|
| 51 | Colon | Position 4377–4484 (Primers APC1309) | No differences |
| 63 | Liver | Position 3956–4068 (Primers APC1450) | No differences |
| 88 | Colon | Position 4377–4484 (Primers APC1309) | APC E1317Q |
| Position 3956–4068 (Primers APC1450) | No differences |
Comparison of partial mitochondrial profiles.
| Cambridge refseq (NC_012920.1) | Ancient DNA | Lab staff | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Position | Base | Mummy No. 63 | Mummy No. 88 | Mummy No. 51 | M.F | I.H | L.H | R.R.A | E.H.S | G.K.B | H.M | N.Z |
| 16080 | A | G | ||||||||||
| 16124 | T | C | ||||||||||
| 16145 | G | A | ||||||||||
| 16146 | A | G | ||||||||||
| 16176 | C | A | ||||||||||
| 16193 | C | T | ||||||||||
| 16218 | C | T | ||||||||||
| 16219 | A | G | ||||||||||
| 16223 | C | T | T | |||||||||
| 16224 | T | C | C | |||||||||
| 16234 | C | T | T | |||||||||
| 16274 | G | A | ||||||||||
| 16297 | T | C | ||||||||||
| 16298 | T | C | ||||||||||
| 16311 | T | C | C | |||||||||
| 16325 | T | C | ||||||||||
| 16356 | T | C | C | |||||||||
| 16360 | C | T | T | |||||||||
| 16362 | T | C | ||||||||||
| 16390 | G | A | ||||||||||
| Total | 20 | 4 | 0 | 3 | 3 | 0 | 2 | 0 | 3 | 4 | 3 | 4 |
a The ancient partial mitochondrial sequences might be influenced by postmortem DNA damage. Thus, C to T and/or G to A transitions might be attributed to postmortem deamination and not to a maternally inherited substitution [42].
Fig 1Comparison of partial APC sequences amplified from ancient samples and from the laboratory staff.
Partial APC sequences amplified with primers APC1309 compared to the NCBI reference sequence NM_000038.5. Laboratory staff members are indicated with initials. Ancient samples are indicated with a mummy number. The sequencing primer is underlined in the reference sequence. Mummy number 88 is the only carrier of the E1317Q mutation.
Fig 2Partial APC sequences amplified from ancient samples.
Partial APC sequences that were amplified with primers APC1450 are compared to the NCBI reference sequence NM_000038.5. The sequencing primer is underlined in the reference sequence. These partial APC sequences of the two mummies were identical to the reference sequence that codes for the wild type protein.
Fig 3A part of the APC sequence amplified from mummy 88.
Highlighted is the homozygous G→C E1317Q missense mutation.