Literature DB >> 26857675

The informational architecture of the cell.

Sara Imari Walker1, Hyunju Kim2, Paul C W Davies2.   

Abstract

We compare the informational architecture of biological and random networks to identify informational features that may distinguish biological networks from random. The study presented here focuses on the Boolean network model for regulation of the cell cycle of the fission yeast Schizosaccharomyces pombe. We compare calculated values of local and global information measures for the fission yeast cell cycle to the same measures as applied to two different classes of random networks: Erdös-Rényi and scale-free. We report patterns in local information processing and storage that do indeed distinguish biological from random, associated with control nodes that regulate the function of the fission yeast cell-cycle network. Conversely, we find that integrated information, which serves as a global measure of 'emergent' information processing, does not differ from random for the case presented. We discuss implications for our understanding of the informational architecture of the fission yeast cell-cycle network in particular, and more generally for illuminating any distinctive physics that may be operative in life.
© 2016 The Author(s).

Entities:  

Keywords:  Boolean network; information dynamics; informational architecture; integrated information; top-down causation; yeast cell cycle

Mesh:

Year:  2016        PMID: 26857675     DOI: 10.1098/rsta.2015.0057

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  17 in total

1.  DNA as information: at the crossroads between biology, mathematics, physics and chemistry.

Authors:  Julyan H E Cartwright; Simone Giannerini; Diego L González
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2016-03-13       Impact factor: 4.226

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Authors:  Santosh Manicka; Michael Levin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-06-10       Impact factor: 6.237

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Authors:  William Marshall; Hyunju Kim; Sara I Walker; Giulio Tononi; Larissa Albantakis
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-12-28       Impact factor: 4.226

4.  Re-conceptualizing the origins of life.

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Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-12-28       Impact factor: 4.226

5.  Deriving pairwise transfer entropy from network structure and motifs.

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Journal:  Proc Math Phys Eng Sci       Date:  2020-04-29       Impact factor: 2.704

6.  Searching for Life, Mindful of Lyfe's Possibilities.

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Journal:  Life (Basel)       Date:  2022-05-25

7.  New scaling relation for information transfer in biological networks.

Authors:  Hyunju Kim; Paul Davies; Sara Imari Walker
Journal:  J R Soc Interface       Date:  2015-12-06       Impact factor: 4.118

8.  Prebiotic RNA Network Formation: A Taxonomy of Molecular Cooperation.

Authors:  Cole Mathis; Sanjay N Ramprasad; Sara Imari Walker; Niles Lehman
Journal:  Life (Basel)       Date:  2017-10-16

Review 9.  Non-Random Genome Editing and Natural Cellular Engineering in Cognition-Based Evolution.

Authors:  William B Miller; Francisco J Enguita; Ana Lúcia Leitão
Journal:  Cells       Date:  2021-05-07       Impact factor: 6.600

10.  How Organisms Gained Causal Independence and How It Might Be Quantified.

Authors:  Keith Douglas Farnsworth
Journal:  Biology (Basel)       Date:  2018-06-29
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