| Literature DB >> 26844289 |
Hector R Wong1, Natalie Z Cvijanovich2, Nick Anas3, Geoffrey L Allen4, Neal J Thomas5, Michael T Bigham6, Scott L Weiss7, Julie Fitzgerald7, Paul A Checchia8, Keith Meyer9, Michael Quasney10, Mark Hall11, Rainer Gedeit12, Robert J Freishtat13, Jeffrey Nowak14, Shekhar S Raj15, Shira Gertz16, Kelli Howard17, Kelli Harmon17, Patrick Lahni17, Erin Frank17, Kimberly W Hart18, Christopher J Lindsell18.
Abstract
The temporal version of the pediatric sepsis biomarker risk model (tPERSEVERE) estimates the risk of a complicated course in children with septic shock based on biomarker changes from days 1 to 3 of septic shock. We validated tPERSEVERE performance in a prospective cohort, with an a priori plan to redesign tPERSEVERE if it did not perform well. Biomarkers were measured in the validation cohort (n = 168) and study subjects were classified according to tPERSEVERE. To redesign tPERSEVERE, the validation cohort and the original derivation cohort (n = 299) were combined and randomly allocated to training (n = 374) and test (n = 93) sets. tPERSEVERE was redesigned using the training set and CART methodology. tPERSEVERE performed poorly in the validation cohort, with an area under the curve (AUC) of 0.67 (95% CI: 0.58-0.75). Failure analysis revealed potential confounders related to clinical characteristics. The redesigned tPERSEVERE model had an AUC of 0.83 (0.79-0.87) and a sensitivity of 93% (68-97) for estimating the risk of a complicated course. Similar performance was seen in the test set. The classification tree segregated patients into two broad endotypes of septic shock characterized by either excessive inflammation or immune suppression.Entities:
Keywords: Biomarkers; Endotype; Immune Suppression; Inflammation; Modeling; Outcome; Prediction; Sepsis
Mesh:
Substances:
Year: 2015 PMID: 26844289 PMCID: PMC4703723 DOI: 10.1016/j.ebiom.2015.11.035
Source DB: PubMed Journal: EBioMedicine ISSN: 2352-3964 Impact factor: 8.143
Demographic and clinical characteristics of the validation cohort.
| Non-complicated course | Complicated course | |
|---|---|---|
| N (%) | 105 (63) | 63 (38) |
| Median age, years (IQR) | 5.3 (1.8–12.8) | 4.8 (1.1–14.9) |
| Males, # (%) | 60 (57) | 37 (59) |
| 28-day mortality, # (%) | 0 (0) | 25 (40) |
| Median PRISM score (IQR) | 10 (7–15) | 13 (8–21) |
| PERSEVERE mortality probability (95% C.I.) | 6.5 (4.6–8.4) | 12.9 (9.5–16.3) |
| # With gram negative bacteria (%) | 27 (26) | 15 (24) |
| # With gram positive bacteria (%) | 19 (18) | 14 (22) |
| # With other pathogen isolated (%) | 9 (9) | 5 (8) |
| # With no pathogen identified (%) | 50 (48) | 29 (46) |
| # With comorbidity (%) | 67 (64) | 47 (75) |
| # With malignancy (%) | 20 (19) | 16 (25) |
| # With immune suppression (%) | 20 (19) | 22 (35) |
| # With bone marrow transplantation (%) | 4 (4) | 10 (16) |
p < 0.05 vs. non-complicated course; Rank sum test.
p < 0.05 vs. non-complicated course; t-test.
p < 0.05 vs. non-complicated course; Chi-square.
Test characteristics of tPERSEVERE for estimating the probability of a complicated course in the validation cohort.
| No. of false positives | 38 |
| No. of true positives | 42 |
| No. of true negatives | 67 |
| No. of false negatives | 21 |
| Sensitivity | 67% (54–78) |
| Specificity | 64% (54–73) |
| Positive predictive value | 52% (41–64) |
| Negative predictive value | 76% (66–84) |
| + Likelihood ratio | 1.84 (1.35–2.51) |
| − Likelihood ratio | 0.52 (0.36–0.76) |
| AUC | 0.67 (0.58–0.75) |
Comparison of the false negative and true positive subjects in the validation cohort.
| VARIABLE | False negatives | True positives | p Value |
|---|---|---|---|
| N | 21 | 42 | = |
| PRISM; median (IQR) | 10 (8–14) | 17 (8–22) | 0.031 |
| Age; median (IQR) | 4.9 (2.6–13.8) | 4.4 (0.8–15.2) | 0.370 |
| Deaths; # (%) | 5 (24) | 20 (48) | 0.069 |
| Males; # (%) | 8 (38) | 29 (69) | 0.019 |
| Malignancy; # (%) | 6 (29) | 10 (23) | 0.682 |
| Immune suppression; # (%) | 5 (24) | 17 (40) | 0.191 |
| Bone marrow transplantation; # (%) | 1 (5) | 9 (21) | 0.144 |
Demographic and clinical characteristics of the training and test sets for re-designing tPERSEVERE.
| Training set | Test set | |
|---|---|---|
| N | 374 | 93 |
| Median age, years (IQR) | 3.0 (1.0–7.5) | 5.6 (1.6–9.9) |
| Males, # (%) | 220 (58) | 55 (59) |
| 28-day mortality, # (%) | 31 (8) | 15 (16) |
| # with complicated course, (%) | 105 (28) | 26 (28) |
| Median PRISM score (IQR) | 12 (8–20) | 11 (8–17) |
| PERSEVERE mortality probability (95% C.I.) | 9.1 (7.6–10.6) | 9.9 (6.9–12.9) |
| # With gram negative bacteria (%) | 91 (24) | 22 (24) |
| # With gram positive bacteria (%) | 85 (23) | 20 (22) |
| # With other pathogen isolated (%) | 41 (11) | 10 (11) |
| # With no pathogen identified (%) | 157 (42) | 41 (44) |
| # With comorbidity (%) | 194 (52) | 46 (49) |
| # With malignancy (%) | 50 (13) | 14 (15) |
| # With immune suppression (%) | 66 (18) | 14 (15) |
| # With bone marrow transplantation (%) | 16 (4) | 8 (9) |
p < 0.05 vs. training set; Rank sum test.
p < 0.05 vs. training set; Chi-square.
Fig. 1The redesigned tPERSEVERE classification tree. The classification tree includes the PERSEVERE-based mortality probability, day 1 and day 3 interleukin 8 (IL8) concentrations, the delta IL8 value, day 1 and day 3 C–C chemokine ligand 3 (CCL3) concentrations, and the day 3 matrix metallopeptidase 8 (MMP8) concentration. The biomarker concentrations are shown in ng/ml. The root node provides the total number of subjects in the training set, and the number of subjects with and without a complicated course, with the respective rates. Each daughter node provides the respective decision rule criterion and the number of subjects with and without a complicated course, with the respective rates. A negative value for a “delta” occurs when the biomarker level is, on average, decreasing. Terminal nodes (TN) TN1, TN3, TN5, TN7, and TN9 are low risk terminal nodes (0.0% to 15.0% risk of complicated course). TN2, TN4, TN6, and TN8 are intermediate risk terminal nodes (28.9% to 46.7% risk of complicated course). TN10 and TN11 are high risk terminal nodes (≥ 50% risk of complicated course).
Test characteristics of the redesigned tPERSEVERE model for estimating the probability of a complicated course in the training and test sets.
| Training set | Test set | |
|---|---|---|
| No. of false positives | 107 | 24 |
| No. of true positives | 98 | 23 |
| No. of true negatives | 162 | 43 |
| No. of false negatives | 7 | 3 |
| Sensitivity | 93% (86–97) | 88% (69–97) |
| Specificity | 60% (54–66) | 64% (51–75) |
| Positive predictive value | 48% (41–55) | 49% (34–64) |
| Negative predictive value | 96% (92–98) | 93% (82–99) |
| + Likelihood ratio | 2.35 (2.01–2.74) | 2.47 (1.74–3.50) |
| − Likelihood ratio | 0.11 (0.05–0.23) | 0.18 (0.06–0.53) |
| AUC | 0.83 (0.79–0.87) | 0.84 (0.75–0.92) |
Fig. 2Classification of the test set according to the redesigned tPERSEVERE model. The test set subjects (n = 93) were classified according to the redesigned tPERSEVERE model without any modifications. The same conventions apply to the decision tree as described for Fig. 1.