Literature DB >> 26839171

Genome-scale study reveals reduced metabolic adaptability in patients with non-alcoholic fatty liver disease.

Tuulia Hyötyläinen1,2, Livnat Jerby3, Elina M Petäjä4,5, Ismo Mattila1,2, Sirkku Jäntti2,6, Petri Auvinen7, Amalia Gastaldelli8, Hannele Yki-Järvinen4,5, Eytan Ruppin3,9, Matej Orešič1,2,10.   

Abstract

Non-alcoholic fatty liver disease (NAFLD) is a major risk factor leading to chronic liver disease and type 2 diabetes. Here we chart liver metabolic activity and functionality in NAFLD by integrating global transcriptomic data, from human liver biopsies, and metabolic flux data, measured across the human splanchnic vascular bed, within a genome-scale model of human metabolism. We show that an increased amount of liver fat induces mitochondrial metabolism, lipolysis, glyceroneogenesis and a switch from lactate to glycerol as substrate for gluconeogenesis, indicating an intricate balance of exacerbated opposite metabolic processes in glycemic regulation. These changes were associated with reduced metabolic adaptability on a network level in the sense that liver fat accumulation puts increasing demands on the liver to adaptively regulate metabolic responses to maintain basic liver functions. We propose that failure to meet excessive metabolic challenges coupled with reduced metabolic adaptability may lead to a vicious pathogenic cycle leading to the co-morbidities of NAFLD.

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Year:  2016        PMID: 26839171      PMCID: PMC4742839          DOI: 10.1038/ncomms9994

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   17.694


  43 in total

1.  Glyceroneogenesis and the source of glycerol for hepatic triacylglycerol synthesis in humans.

Authors:  S C Kalhan; S Mahajan; E Burkett; L Reshef; R W Hanson
Journal:  J Biol Chem       Date:  2001-01-29       Impact factor: 5.157

2.  The effects of alternate optimal solutions in constraint-based genome-scale metabolic models.

Authors:  R Mahadevan; C H Schilling
Journal:  Metab Eng       Date:  2003-10       Impact factor: 9.783

3.  Increased lipolysis and its consequences on gluconeogenesis in non-insulin-dependent diabetes mellitus.

Authors:  N Nurjhan; A Consoli; J Gerich
Journal:  J Clin Invest       Date:  1992-01       Impact factor: 14.808

4.  Liver-directed overexpression of mitochondrial glycerol-3-phosphate acyltransferase results in hepatic steatosis, increased triacylglycerol secretion and reduced fatty acid oxidation.

Authors:  Daniel Lindén; Lena William-Olsson; Andrea Ahnmark; Kim Ekroos; Carina Hallberg; Helena P Sjögren; Bruno Becker; Lennart Svensson; John C Clapham; Jan Oscarsson; Sandra Schreyer
Journal:  FASEB J       Date:  2006-03       Impact factor: 5.191

5.  Whole body and splanchnic metabolic and circulatory effects of glucose during beta-adrenergic receptor inhibition.

Authors:  T Brundin; A K Aksnes; J Wahren
Journal:  Am J Physiol       Date:  1997-04

6.  Excessive hepatic mitochondrial TCA cycle and gluconeogenesis in humans with nonalcoholic fatty liver disease.

Authors:  Nishanth E Sunny; Elizabeth J Parks; Jeffrey D Browning; Shawn C Burgess
Journal:  Cell Metab       Date:  2011-12-07       Impact factor: 27.287

7.  HepatoNet1: a comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology.

Authors:  Christoph Gille; Christian Bölling; Andreas Hoppe; Sascha Bulik; Sabrina Hoffmann; Katrin Hübner; Anja Karlstädt; Ramanan Ganeshan; Matthias König; Kristian Rother; Michael Weidlich; Jörn Behre; Herrmann-Georg Holzhütter
Journal:  Mol Syst Biol       Date:  2010-09-07       Impact factor: 11.429

8.  Proteomic analysis of fructose-induced fatty liver in hamsters.

Authors:  Lihe Zhang; German Perdomo; Dae Hyun Kim; Shen Qu; Steven Ringquist; Massimo Trucco; H Henry Dong
Journal:  Metabolism       Date:  2008-08       Impact factor: 8.694

9.  Predicting selective drug targets in cancer through metabolic networks.

Authors:  Ori Folger; Livnat Jerby; Christian Frezza; Eyal Gottlieb; Eytan Ruppin; Tomer Shlomi
Journal:  Mol Syst Biol       Date:  2011-06-21       Impact factor: 11.429

10.  Hepatic stearoyl-CoA desaturase (SCD)-1 activity and diacylglycerol but not ceramide concentrations are increased in the nonalcoholic human fatty liver.

Authors:  Anna Kotronen; Tuulikki Seppänen-Laakso; Jukka Westerbacka; Tuula Kiviluoto; Johanna Arola; Anna-Liisa Ruskeepää; Matej Oresic; Hannele Yki-Järvinen
Journal:  Diabetes       Date:  2008-10-24       Impact factor: 9.461

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  43 in total

1.  Cognitive analysis of metabolomics data for systems biology.

Authors:  Erica L-W Majumder; Elizabeth M Billings; H Paul Benton; Richard L Martin; Amelia Palermo; Carlos Guijas; Markus M Rinschen; Xavier Domingo-Almenara; J Rafael Montenegro-Burke; Bradley A Tagtow; Robert S Plumb; Gary Siuzdak
Journal:  Nat Protoc       Date:  2021-01-22       Impact factor: 13.491

2.  Framework and resource for more than 11,000 gene-transcript-protein-reaction associations in human metabolism.

Authors:  Jae Yong Ryu; Hyun Uk Kim; Sang Yup Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-24       Impact factor: 11.205

3.  Tracing insights into human metabolism using chemical engineering approaches.

Authors:  Thekla Cordes; Christian M Metallo
Journal:  Curr Opin Chem Eng       Date:  2016-09-10       Impact factor: 5.163

4.  Remodeling adipose tissue through in silico modulation of fat storage for the prevention of type 2 diabetes.

Authors:  Thierry Chénard; Frédéric Guénard; Marie-Claude Vohl; André Carpentier; André Tchernof; Rafael J Najmanovich
Journal:  BMC Syst Biol       Date:  2017-06-12

Review 5.  The Role of Mitochondrial Adaptation and Metabolic Flexibility in the Pathophysiology of Obesity and Insulin Resistance: an Updated Overview.

Authors:  Dimitrios Tsilingiris; Evangelia Tzeravini; Chrysi Koliaki; Maria Dalamaga; Alexander Kokkinos
Journal:  Curr Obes Rep       Date:  2021-04-10

Review 6.  Multi-dimensional Roles of Ketone Bodies in Fuel Metabolism, Signaling, and Therapeutics.

Authors:  Patrycja Puchalska; Peter A Crawford
Journal:  Cell Metab       Date:  2017-02-07       Impact factor: 27.287

7.  Impaired ketogenesis and increased acetyl-CoA oxidation promote hyperglycemia in human fatty liver.

Authors:  Justin A Fletcher; Stanisław Deja; Santhosh Satapati; Xiaorong Fu; Shawn C Burgess; Jeffrey D Browning
Journal:  JCI Insight       Date:  2019-04-23

Review 8.  Stable isotope-based flux studies in nonalcoholic fatty liver disease.

Authors:  Arthur McCullough; Stephen Previs; Takhar Kasumov
Journal:  Pharmacol Ther       Date:  2017-07-16       Impact factor: 12.310

9.  Targeting Hepatic Glutaminase 1 Ameliorates Non-alcoholic Steatohepatitis by Restoring Very-Low-Density Lipoprotein Triglyceride Assembly.

Authors:  Jorge Simon; Maitane Nuñez-García; Pablo Fernández-Tussy; Lucía Barbier-Torres; David Fernández-Ramos; Beatriz Gómez-Santos; Xabier Buqué; Fernando Lopitz-Otsoa; Naroa Goikoetxea-Usandizaga; Marina Serrano-Macia; Rubén Rodriguez-Agudo; Maider Bizkarguenaga; Imanol Zubiete-Franco; Virginia Gutiérrez-de Juan; Diana Cabrera; Cristina Alonso; Paula Iruzubieta; Manuel Romero-Gomez; Sebastiaan van Liempd; Azucena Castro; Ruben Nogueiras; Marta Varela-Rey; Juan Manuel Falcón-Pérez; Erica Villa; Javier Crespo; Shelly C Lu; Jose M Mato; Patricia Aspichueta; Teresa C Delgado; María Luz Martínez-Chantar
Journal:  Cell Metab       Date:  2020-02-21       Impact factor: 27.287

Review 10.  Interpreting the lipidome: bioinformatic approaches to embrace the complexity.

Authors:  Jennifer E Kyle; Lucila Aimo; Alan J Bridge; Geremy Clair; Maria Fedorova; J Bernd Helms; Martijn R Molenaar; Zhixu Ni; Matej Orešič; Denise Slenter; Egon Willighagen; Bobbie-Jo M Webb-Robertson
Journal:  Metabolomics       Date:  2021-06-06       Impact factor: 4.290

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