Literature DB >> 26835365

Spanning the genomics era: the vital role of a single institution biorepository for childhood cancer research over a decade.

Li Zhou1, Daniel Catchpoole1.   

Abstract

The 'genomics era' is considered to have begun with the commencement of the Human Genome Project. As translational genomic studies can only be established when human tissue samples are available for analysis, biospecimens are now proven to be an essential element for their success. During the genomics era the necessity for more extensive biobanking infrastructure has been highlighted. With the increased number of genomic studies into cancer, it is considered that the availability of biospecimens will become the rate limiting step. Despite the efforts in international biobanking, translational genomics is hampered when there low numbers of biospecimens for a particular rare diseases and is most apparent for paediatric cancer. As there is a call for biobanking practice to be responsive to the current experimental needs of the time and for more expansive systems of tissue procurement to be established we have asked the question what role does a single institution biorepository play in the current highly networked world of translational genomics. Here we describe such a case. The Tumour Bank at The Children's Hospital at Westmead (TB-CHW) in the western suburbs of Sydney was formally established in 1998 as a key resource for translational paediatric cancer research. During the genomics era, we show that the TB-CHW has developed into a key biospecimen repository for the cancer research community, during which time it has increasingly found itself having a vital role in the establishment of translational genomics for paediatric cancer. Here we detail metrics that demonstrate how as a single institution biorepository, the TB-CHW has been a strong participant in the advancement of translational genomics throughout the genomics era. This paper describes the significant contribution of a single institutional hospital embedded tumour biobank to the genomic research community. Despite the increased stringencies placed on biobanking practice, the TB-CHW has shown that a single institution biorespository can have a consistent and effective contribution to translational research into rare paediatric malignancy demonstrating its long term benefit throughout the genomics era.

Entities:  

Keywords:  Biobanking; biorepository; childhood cancer; genomics; rare disease; research contribution

Year:  2015        PMID: 26835365      PMCID: PMC4729086          DOI: 10.3978/j.issn.2224-4336.2015.04.05

Source DB:  PubMed          Journal:  Transl Pediatr        ISSN: 2224-4336


  67 in total

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3.  Gene expression profiles that segregate patients with childhood acute lymphoblastic leukaemia: an independent validation study identifies that endoglin associates with patient outcome.

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Journal:  Leuk Res       Date:  2007-06-18       Impact factor: 3.156

4.  Expression of the HOX genes and HOTAIR in atypical teratoid rhabdoid tumors and other pediatric brain tumors.

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Journal:  Cancer Genet       Date:  2014-06-10

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6.  Markers of survival and metastatic potential in childhood CNS primitive neuro-ectodermal brain tumours: an integrative genomic analysis.

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9.  Complex patterns of chromosome 9 alterations including the p16INK4a locus in Wilms tumours.

Authors:  R Natrajan; W Warren; B Messahel; J S Reis-Filho; M-A Brundler; J S Dome; P E Grundy; G Vujanic; K Pritchard-Jones; C Jones
Journal:  J Clin Pathol       Date:  2007-03-16       Impact factor: 3.411

10.  Detection of alternative lengthening of telomeres by telomere quantitative PCR.

Authors:  Loretta M S Lau; Rebecca A Dagg; Jeremy D Henson; Amy Y M Au; Janice A Royds; Roger R Reddel
Journal:  Nucleic Acids Res       Date:  2012-08-25       Impact factor: 16.971

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  1 in total

1.  Impact of biobanks on research outcomes in rare diseases: a systematic review.

Authors:  Monique Garcia; Jenny Downs; Alyce Russell; Wei Wang
Journal:  Orphanet J Rare Dis       Date:  2018-11-12       Impact factor: 4.123

  1 in total

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