Literature DB >> 26832693

Editing the Mouse Genome Using the CRISPR-Cas9 System.

Adam Williams1, Jorge Henao-Mejia2, Richard A Flavell3.   

Abstract

The ability to modify the murine genome is perhaps one of the most important developments in modern biology. However, traditional methods of genomic engineering are costly and relatively clumsy in their approach. The use of programmable nucleases such as zinc finger nucleases and transcription activator-like effector nucleases significantly improved the precision of genome-editing technology, but the design and use of these nucleases remains cumbersome and prohibitively expensive. The CRISPR-Cas9 system is the next installment in the line of programmable nucleases; it provides highly efficient and precise genome-editing capabilities using reagents that are simple to design and inexpensive to generate. Furthermore, with the CRISPR-Cas9 system, it is possible to move from a hypothesis to an in vivo mouse model in less than a month. The simplicity, cost effectiveness, and speed of the CRISPR-Cas9 system allows researchers to tackle questions that otherwise would not be technically or financially viable. In this introduction, we discuss practical considerations for the use of Cas9 in genome engineering in mice.
© 2016 Cold Spring Harbor Laboratory Press.

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Year:  2016        PMID: 26832693      PMCID: PMC4898480          DOI: 10.1101/pdb.top087536

Source DB:  PubMed          Journal:  Cold Spring Harb Protoc        ISSN: 1559-6095


  21 in total

1.  Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease.

Authors:  Seung Woo Cho; Sojung Kim; Jong Min Kim; Jin-Soo Kim
Journal:  Nat Biotechnol       Date:  2013-01-29       Impact factor: 54.908

2.  Efficient genome modification by CRISPR-Cas9 nickase with minimal off-target effects.

Authors:  Bin Shen; Wensheng Zhang; Jun Zhang; Jiankui Zhou; Jianying Wang; Li Chen; Lu Wang; Alex Hodgkins; Vivek Iyer; Xingxu Huang; William C Skarnes
Journal:  Nat Methods       Date:  2014-03-02       Impact factor: 28.547

3.  Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre.

Authors:  Ezgi Hacisuleyman; Loyal A Goff; Cole Trapnell; Adam Williams; Jorge Henao-Mejia; Lei Sun; Patrick McClanahan; David G Hendrickson; Martin Sauvageau; David R Kelley; Michael Morse; Jesse Engreitz; Eric S Lander; Mitch Guttman; Harvey F Lodish; Richard Flavell; Arjun Raj; John L Rinn
Journal:  Nat Struct Mol Biol       Date:  2014-01-26       Impact factor: 15.369

4.  One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering.

Authors:  Haoyi Wang; Hui Yang; Chikdu S Shivalila; Meelad M Dawlaty; Albert W Cheng; Feng Zhang; Rudolf Jaenisch
Journal:  Cell       Date:  2013-05-02       Impact factor: 41.582

5.  Efficient genome engineering in human pluripotent stem cells using Cas9 from Neisseria meningitidis.

Authors:  Zhonggang Hou; Yan Zhang; Nicholas E Propson; Sara E Howden; Li-Fang Chu; Erik J Sontheimer; James A Thomson
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-12       Impact factor: 11.205

6.  CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III.

Authors:  Elitza Deltcheva; Krzysztof Chylinski; Cynthia M Sharma; Karine Gonzales; Yanjie Chao; Zaid A Pirzada; Maria R Eckert; Jörg Vogel; Emmanuelle Charpentier
Journal:  Nature       Date:  2011-03-31       Impact factor: 49.962

7.  CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering.

Authors:  Prashant Mali; John Aach; P Benjamin Stranges; Kevin M Esvelt; Mark Moosburner; Sriram Kosuri; Luhan Yang; George M Church
Journal:  Nat Biotechnol       Date:  2013-08-01       Impact factor: 54.908

8.  Homologous recombination in human embryonic stem cells using CRISPR/Cas9 nickase and a long DNA donor template.

Authors:  Zhili Rong; Shengyun Zhu; Yang Xu; Xuemei Fu
Journal:  Protein Cell       Date:  2014-04       Impact factor: 14.870

9.  Improving CRISPR-Cas nuclease specificity using truncated guide RNAs.

Authors:  Yanfang Fu; Jeffry D Sander; Deepak Reyon; Vincent M Cascio; J Keith Joung
Journal:  Nat Biotechnol       Date:  2014-01-26       Impact factor: 54.908

10.  Conditional targeting of Ispd using paired Cas9 nickase and a single DNA template in mice.

Authors:  Angus Yiu-Fai Lee; Kevin C Kent Lloyd
Journal:  FEBS Open Bio       Date:  2014-07-01       Impact factor: 2.693

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  8 in total

1.  IL-10-Dependent Crosstalk between Murine Marginal Zone B Cells, Macrophages, and CD8α+ Dendritic Cells Promotes Listeria monocytogenes Infection.

Authors:  Dong Liu; Xiangyun Yin; Sam J Olyha; Manuela Sales L Nascimento; Pei Chen; Theresa White; Uthaman Gowthaman; Tingting Zhang; Jake A Gertie; Biyan Zhang; Lan Xu; Marina Yurieva; Lesley Devine; Adam Williams; Stephanie C Eisenbarth
Journal:  Immunity       Date:  2019-06-20       Impact factor: 31.745

Review 2.  Polygenic Causes of Congenital Diaphragmatic Hernia Produce Common Lung Pathologies.

Authors:  Patricia K Donahoe; Mauro Longoni; Frances A High
Journal:  Am J Pathol       Date:  2016-08-24       Impact factor: 4.307

3.  The lateral meningocele syndrome mutation causes marked osteopenia in mice.

Authors:  Ernesto Canalis; Jungeun Yu; Lauren Schilling; Siu-Pok Yee; Stefano Zanotti
Journal:  J Biol Chem       Date:  2018-07-24       Impact factor: 5.157

4.  Electroporation of mice zygotes with dual guide RNA/Cas9 complexes for simple and efficient cloning-free genome editing.

Authors:  Marie Teixeira; Bénédicte F Py; Christophe Bosc; Daphné Laubreton; Marie-Jo Moutin; Jacqueline Marvel; Frédéric Flamant; Suzy Markossian
Journal:  Sci Rep       Date:  2018-01-11       Impact factor: 4.379

5.  Detection of CRISPR-mediated genome modifications through altered methylation patterns of CpG islands.

Authors:  M Heath Farris; Pamela A Texter; Agustin A Mora; Michael V Wiles; Ellen F Mac Garrigle; Sybil A Klaus; Kristine Rosfjord
Journal:  BMC Genomics       Date:  2020-12-02       Impact factor: 3.969

6.  A Kalirin missense mutation enhances dendritic RhoA signaling and leads to regression of cortical dendritic arbors across development.

Authors:  Melanie J Grubisha; Tao Sun; Leanna Eisenman; Susan L Erickson; Shinnyi Chou; Cassandra D Helmer; Melody T Trudgen; Ying Ding; Gregg E Homanics; Peter Penzes; Zachary P Wills; Robert A Sweet
Journal:  Proc Natl Acad Sci U S A       Date:  2021-12-07       Impact factor: 12.779

7.  Effects of Rab7 gene up-regulation on renal fibrosis induced by unilateral ureteral obstruction.

Authors:  Qing Xu; Lei Liu; Yiqiong Yang; Zhi Wang; Yingying Cai; Tingting Hong; Pingsheng Chen
Journal:  Braz J Med Biol Res       Date:  2020-04-06       Impact factor: 2.590

Review 8.  Genetically Engineering the Nervous System with CRISPR-Cas.

Authors:  Alfredo Sandoval; Hajira Elahi; Jonathan E Ploski
Journal:  eNeuro       Date:  2020-03-25
  8 in total

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