Literature DB >> 26831989

Experimental robustness of Fourier ptychography phase retrieval algorithms.

Li-Hao Yeh, Jonathan Dong, Jingshan Zhong, Lei Tian, Michael Chen, Gongguo Tang, Mahdi Soltanolkotabi, Laura Waller.   

Abstract

Fourier ptychography is a new computational microscopy technique that provides gigapixel-scale intensity and phase images with both wide field-of-view and high resolution. By capturing a stack of low-resolution images under different illumination angles, an inverse algorithm can be used to computationally reconstruct the high-resolution complex field. Here, we compare and classify multiple proposed inverse algorithms in terms of experimental robustness. We find that the main sources of error are noise, aberrations and mis-calibration (i.e. model mis-match). Using simulations and experiments, we demonstrate that the choice of cost function plays a critical role, with amplitude-based cost functions performing better than intensity-based ones. The reason for this is that Fourier ptychography datasets consist of images from both brightfield and darkfield illumination, representing a large range of measured intensities. Both noise (e.g. Poisson noise) and model mis-match errors are shown to scale with intensity. Hence, algorithms that use an appropriate cost function will be more tolerant to both noise and model mis-match. Given these insights, we propose a global Newton's method algorithm which is robust and accurate. Finally, we discuss the impact of procedures for algorithmic correction of aberrations and mis-calibration.

Entities:  

Year:  2015        PMID: 26831989     DOI: 10.1364/OE.23.033214

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  21 in total

1.  Near-field Fourier ptychography: super-resolution phase retrieval via speckle illumination.

Authors:  He Zhang; Shaowei Jiang; Jun Liao; Junjing Deng; Jian Liu; Yongbing Zhang; Guoan Zheng
Journal:  Opt Express       Date:  2019-03-04       Impact factor: 3.894

2.  Computational structured illumination for high-content fluorescence and phase microscopy.

Authors:  Li-Hao Yeh; Shwetadwip Chowdhury; Laura Waller
Journal:  Biomed Opt Express       Date:  2019-03-22       Impact factor: 3.732

3.  Diffraction tomography with Fourier ptychography.

Authors:  Roarke Horstmeyer; Jaebum Chung; Xiaoze Ou; Guoan Zheng; Changhuei Yang
Journal:  Optica       Date:  2016-07-27       Impact factor: 11.104

4.  Motion-corrected Fourier ptychography.

Authors:  Liheng Bian; Guoan Zheng; Kaikai Guo; Jinli Suo; Changhuei Yang; Feng Chen; Qionghai Dai
Journal:  Biomed Opt Express       Date:  2016-10-12       Impact factor: 3.732

5.  Reliable deep-learning-based phase imaging with uncertainty quantification.

Authors:  Yujia Xue; Shiyi Cheng; Yunzhe Li; Lei Tian
Journal:  Optica       Date:  2019-05-07       Impact factor: 11.104

6.  Diffraction tomography with a deep image prior.

Authors:  Kevin C Zhou; Roarke Horstmeyer
Journal:  Opt Express       Date:  2020-04-27       Impact factor: 3.894

7.  Acoustofluidic Scanning Nanoscope with High Resolution and Large Field of View.

Authors:  Geonsoo Jin; Hunter Bachman; Ty Downing Naquin; Joseph Rufo; Serena Hou; Zhenhua Tian; Chenglong Zhao; Tony Jun Huang
Journal:  ACS Nano       Date:  2020-06-23       Impact factor: 15.881

8.  High-resolution 3D Fourier ptychographic reconstruction using a hemispherical illumination source with multiplexed-coded strategy.

Authors:  Minglu Sun; Lina Shao; Jinrui Zhang; Youqiang Zhu; Peilin Wu; Yukun Wang; Zhihui Diao; QuanQuan Mu; Dayu Li; Hongda Wang; Li Xuan
Journal:  Biomed Opt Express       Date:  2022-03-14       Impact factor: 3.732

9.  Integration of Fourier ptychography with machine learning: an alternative scheme.

Authors:  Yiwen Chen; Tingfa Xu; Haixin Sun; Jizhou Zhang; Bo Huang; Jinhua Zhang; Jianan Li
Journal:  Biomed Opt Express       Date:  2022-07-21       Impact factor: 3.562

10.  Efficient ptychographic phase retrieval via a matrix-free Levenberg-Marquardt algorithm.

Authors:  Saugat Kandel; S Maddali; Youssef S G Nashed; Stephan O Hruszkewycz; Chris Jacobsen; Marc Allain
Journal:  Opt Express       Date:  2021-07-19       Impact factor: 3.833

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