Literature DB >> 26829757

SPLINTS: small-molecule protein ligand interface stabilizers.

Eric S Fischer1, Eunyoung Park2, Michael J Eck3, Nicolas H Thomä4.   

Abstract

Regulatory protein-protein interactions are ubiquitous in biology, and small molecule protein-protein interaction inhibitors are an important focus in drug discovery. Remarkably little attention has been given to the opposite strategy-stabilization of protein-protein interactions, despite the fact that several well-known therapeutics act through this mechanism. From a structural perspective, we consider representative examples of small molecules that induce or stabilize the association of protein domains to inhibit, or alter, signaling for nuclear hormone, GTPase, kinase, phosphatase, and ubiquitin ligase pathways. These SPLINTS (small-molecule protein ligand interface stabilizers) drive interactions that are in some cases physiologically relevant, and in others entirely adventitious. The diverse structural mechanisms employed suggest approaches for a broader and systematic search for such compounds in drug discovery.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 26829757      PMCID: PMC4834252          DOI: 10.1016/j.sbi.2016.01.004

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  56 in total

Review 1.  Brefeldin A: the advantage of being uncompetitive.

Authors:  P Chardin; F McCormick
Journal:  Cell       Date:  1999-04-16       Impact factor: 41.582

2.  Crystal structure of the Src family tyrosine kinase Hck.

Authors:  F Sicheri; I Moarefi; J Kuriyan
Journal:  Nature       Date:  1997-02-13       Impact factor: 49.962

3.  Three-dimensional structure of the tyrosine kinase c-Src.

Authors:  W Xu; S C Harrison; M J Eck
Journal:  Nature       Date:  1997-02-13       Impact factor: 49.962

Review 4.  Modulators of protein-protein interactions.

Authors:  Lech-Gustav Milroy; Tom N Grossmann; Sven Hennig; Luc Brunsveld; Christian Ottmann
Journal:  Chem Rev       Date:  2014-04-15       Impact factor: 60.622

5.  Crystal structures of human calcineurin and the human FKBP12-FK506-calcineurin complex.

Authors:  C R Kissinger; H E Parge; D R Knighton; C T Lewis; L A Pelletier; A Tempczyk; V J Kalish; K D Tucker; R E Showalter; E W Moomaw
Journal:  Nature       Date:  1995-12-07       Impact factor: 49.962

Review 6.  The Akt/PKB family of protein kinases: a review of small molecule inhibitors and progress towards target validation: a 2009 update.

Authors:  Craig W Lindsley
Journal:  Curr Top Med Chem       Date:  2010       Impact factor: 3.295

7.  Structure of the FKBP12-rapamycin complex interacting with the binding domain of human FRAP.

Authors:  J Choi; J Chen; S L Schreiber; J Clardy
Journal:  Science       Date:  1996-07-12       Impact factor: 47.728

8.  X-ray structure of calcineurin inhibited by the immunophilin-immunosuppressant FKBP12-FK506 complex.

Authors:  J P Griffith; J L Kim; E E Kim; M D Sintchak; J A Thomson; M J Fitzgibbon; M A Fleming; P R Caron; K Hsiao; M A Navia
Journal:  Cell       Date:  1995-08-11       Impact factor: 41.582

9.  Structure of the DDB1-CRBN E3 ubiquitin ligase in complex with thalidomide.

Authors:  Eric S Fischer; Kerstin Böhm; John R Lydeard; Haidi Yang; Michael B Stadler; Simone Cavadini; Jane Nagel; Fabrizio Serluca; Vincent Acker; Gondichatnahalli M Lingaraju; Ritesh B Tichkule; Michael Schebesta; William C Forrester; Markus Schirle; Ulrich Hassiepen; Johannes Ottl; Marc Hild; Rohan E J Beckwith; J Wade Harper; Jeremy L Jenkins; Nicolas H Thomä
Journal:  Nature       Date:  2014-07-16       Impact factor: 49.962

10.  Immunomodulatory agents lenalidomide and pomalidomide co-stimulate T cells by inducing degradation of T cell repressors Ikaros and Aiolos via modulation of the E3 ubiquitin ligase complex CRL4(CRBN.).

Authors:  Anita K Gandhi; Jian Kang; Courtney G Havens; Thomas Conklin; Yuhong Ning; Lei Wu; Takumi Ito; Hideki Ando; Michelle F Waldman; Anjan Thakurta; Anke Klippel; Hiroshi Handa; Thomas O Daniel; Peter H Schafer; Rajesh Chopra
Journal:  Br J Haematol       Date:  2013-12-13       Impact factor: 6.998

View more
  14 in total

1.  Targeted protein degradation: You can glue it too!

Authors:  Michal J Walczak; Georg Petzold; Nicolas H Thomä
Journal:  Nat Chem Biol       Date:  2017-04-13       Impact factor: 15.040

2.  The Evolving Druggability and Developability Space: Chemically Modified New Modalities and Emerging Small Molecules.

Authors:  Wenzhan Yang; Prajakta Gadgil; Venkata R Krishnamurthy; Margaret Landis; Pankajini Mallick; Dipal Patel; Phenil J Patel; Darren L Reid; Manuel Sanchez-Felix
Journal:  AAPS J       Date:  2020-01-03       Impact factor: 4.009

3.  Development and preclinical validation of a novel covalent ubiquitin receptor Rpn13 degrader in multiple myeloma.

Authors:  Yan Song; Paul M C Park; Lei Wu; Arghya Ray; Sarah Picaud; Deyao Li; Virangika K Wimalasena; Ting Du; Panagis Filippakopoulos; Kenneth C Anderson; Jun Qi; Dharminder Chauhan
Journal:  Leukemia       Date:  2019-04-08       Impact factor: 11.528

4.  The small-molecule protein ligand interface stabiliser E7820 induces differential cell line specific responses of integrin α2 expression.

Authors:  Michael David Hülskamp; Daniel Kronenberg; Richard Stange
Journal:  BMC Cancer       Date:  2021-05-18       Impact factor: 4.430

Review 5.  How to Train a Cell-Cutting-Edge Molecular Tools.

Authors:  Jakub Czapiński; Michał Kiełbus; Joanna Kałafut; Michał Kos; Andrzej Stepulak; Adolfo Rivero-Müller
Journal:  Front Chem       Date:  2017-03-10       Impact factor: 5.221

6.  Structural basis of PROTAC cooperative recognition for selective protein degradation.

Authors:  Morgan S Gadd; Andrea Testa; Xavier Lucas; Kwok-Ho Chan; Wenzhang Chen; Douglas J Lamont; Michael Zengerle; Alessio Ciulli
Journal:  Nat Chem Biol       Date:  2017-03-13       Impact factor: 15.040

7.  Structure-Guided Design of Peptides as Tools to Probe the Protein-Protein Interaction between Cullin-2 and Elongin BC Substrate Adaptor in Cullin RING E3 Ubiquitin Ligases.

Authors:  Teresa A F Cardote; Alessio Ciulli
Journal:  ChemMedChem       Date:  2017-09-01       Impact factor: 3.466

Review 8.  Molecular recognition of ternary complexes: a new dimension in the structure-guided design of chemical degraders.

Authors:  Scott J Hughes; Alessio Ciulli
Journal:  Essays Biochem       Date:  2017-11-08       Impact factor: 8.000

9.  AirID, a novel proximity biotinylation enzyme, for analysis of protein-protein interactions.

Authors:  Kohki Kido; Satoshi Yamanaka; Shogo Nakano; Kou Motani; Souta Shinohara; Akira Nozawa; Hidetaka Kosako; Sohei Ito; Tatsuya Sawasaki
Journal:  Elife       Date:  2020-05-11       Impact factor: 8.140

10.  Plasticity in binding confers selectivity in ligand-induced protein degradation.

Authors:  Radosław P Nowak; Stephen L DeAngelo; Dennis Buckley; Zhixiang He; Katherine A Donovan; Jian An; Nozhat Safaee; Mark P Jedrychowski; Charles M Ponthier; Mette Ishoey; Tinghu Zhang; Joseph D Mancias; Nathanael S Gray; James E Bradner; Eric S Fischer
Journal:  Nat Chem Biol       Date:  2018-06-11       Impact factor: 15.040

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.