Literature DB >> 26827284

The role of ATP-dependent machines in regulating genome topology.

Glenn Hauk1, James M Berger2.   

Abstract

All cells must copy and express genes in accord with internal and external cues. The proper timing and response of such events relies on the active control of higher-order genomic organization. Cells use ATP-dependent molecular machines to alter the local and global topology of DNA so as to promote and counteract the persistent effects of transcription and replication. X-ray crystallography and electron microscopy, coupled with biochemical and single molecule methods are continuing to provide a wealth of mechanistic information on how DNA remodeling factors are employed to dynamically shape and organize the genome.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 26827284      PMCID: PMC4785063          DOI: 10.1016/j.sbi.2016.01.006

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  124 in total

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5.  Structure and mechanism of the chromatin remodelling factor ISW1a.

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Journal:  Nat Struct Mol Biol       Date:  2013-12-01       Impact factor: 15.369

7.  Structure and subunit topology of the INO80 chromatin remodeler and its nucleosome complex.

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Journal:  Cell       Date:  2013-09-12       Impact factor: 41.582

8.  Torque modulates nucleosome stability and facilitates H2A/H2B dimer loss.

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Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

9.  Transcription-generated torsional stress destabilizes nucleosomes.

Authors:  Sheila S Teves; Steven Henikoff
Journal:  Nat Struct Mol Biol       Date:  2013-12-08       Impact factor: 15.369

10.  Molecular architecture of the ATP-dependent chromatin-remodeling complex SWR1.

Authors:  Vu Q Nguyen; Anand Ranjan; Florian Stengel; Debbie Wei; Ruedi Aebersold; Carl Wu; Andres E Leschziner
Journal:  Cell       Date:  2013-09-12       Impact factor: 41.582

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  13 in total

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Review 3.  Genome maintenance in the context of 4D chromatin condensation.

Authors:  Sonia Yu; Fan Yang; Wen H Shen
Journal:  Cell Mol Life Sci       Date:  2016-04-20       Impact factor: 9.261

4.  Molecular mechanisms of eukaryotic origin initiation, replication fork progression, and chromatin maintenance.

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Journal:  Biochem J       Date:  2020-09-30       Impact factor: 3.857

5.  The condensin complex is a mechanochemical motor that translocates along DNA.

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Review 6.  Effects of DNA supercoiling on chromatin architecture.

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Review 7.  Effects of DNA supercoiling on chromatin architecture.

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Journal:  Biophys Rev       Date:  2016-11-14

8.  Structure of the active form of human origin recognition complex and its ATPase motor module.

Authors:  Ante Tocilj; Kin Fan On; Zuanning Yuan; Jingchuan Sun; Elad Elkayam; Huilin Li; Bruce Stillman; Leemor Joshua-Tor
Journal:  Elife       Date:  2017-01-23       Impact factor: 8.140

9.  Exploring the active site of the Streptococcus pneumoniae topoisomerase IV-DNA cleavage complex with novel 7,8-bridged fluoroquinolones.

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10.  Deciphering Intrinsic Inter-subunit Couplings that Lead to Sequential Hydrolysis of F1-ATPase Ring.

Authors:  Liqiang Dai; Holger Flechsig; Jin Yu
Journal:  Biophys J       Date:  2017-10-03       Impact factor: 4.033

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