Literature DB >> 26825705

Computer modelling studies of the bilayer/water interface.

Marta Pasenkiewicz-Gierula1, Krzysztof Baczynski2, Michal Markiewicz2, Krzysztof Murzyn2.   

Abstract

This review summarises high resolution studies on the interface of lamellar lipid bilayers composed of the most typical lipid molecules which constitute the lipid matrix of biomembranes. The presented results were obtained predominantly by computer modelling methods. Whenever possible, the results were compared with experimental results obtained for similar systems. The first and main section of the review is concerned with the bilayer-water interface and is divided into four subsections. The first describes the simplest case, where the interface consists only of lipid head groups and water molecules and focuses on interactions between the lipid heads and water molecules; the second describes the interface containing also mono- and divalent ions and concentrates on lipid-ion interactions; the third describes direct inter-lipid interactions. These three subsections are followed by a discussion on the network of direct and indirect inter-lipid interactions at the bilayer interface. The second section summarises recent computer simulation studies on the interactions of antibacterial membrane active compounds with various models of the bacterial outer membrane. This article is part of a Special Issue entitled: Biosimulations edited by Ilpo Vattulainen and Tomasz Róg.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Antibacterial peptides; Hydrogen bond; Interaction network; Ion bridge; MD simulation; Water bridge

Mesh:

Substances:

Year:  2016        PMID: 26825705     DOI: 10.1016/j.bbamem.2016.01.024

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  17 in total

Review 1.  Polyphosphoinositide-Binding Domains: Insights from Peripheral Membrane and Lipid-Transfer Proteins.

Authors:  Joshua G Pemberton; Tamas Balla
Journal:  Adv Exp Med Biol       Date:  2019       Impact factor: 2.622

2.  A mixed alchemical and equilibrium dynamics to simulate heterogeneous dense fluids: Illustrations for Lennard-Jones mixtures and phospholipid membranes.

Authors:  Arman Fathizadeh; Ron Elber
Journal:  J Chem Phys       Date:  2018-08-21       Impact factor: 3.488

3.  Dynamic Water Hydrogen-Bond Networks at the Interface of a Lipid Membrane Containing Palmitoyl-Oleoyl Phosphatidylglycerol.

Authors:  Konstantina Karathanou; Ana-Nicoleta Bondar
Journal:  J Membr Biol       Date:  2018-03-09       Impact factor: 1.843

4.  Order vs. Disorder: Cholesterol and Omega-3 Phospholipids Determine Biomembrane Organization.

Authors:  Augusta de Santis; Ernesto Scoppola; Maria Francesca Ottaviani; Alexandros Koutsioubas; Lester C Barnsley; Luigi Paduano; Gerardino D'Errico; Irene Russo Krauss
Journal:  Int J Mol Sci       Date:  2022-05-10       Impact factor: 6.208

5.  Broadband dielectric spectroscopy from sub GHz to THz of hydrated lipid bilayer of DMPC.

Authors:  Yu Kadomura; Naoki Yamamoto; Keisuke Tominaga
Journal:  Eur Phys J E Soft Matter       Date:  2019-10-30       Impact factor: 1.890

6.  Movement of giant lipid vesicles induced by millimeter wave radiation change when they contain magnetic nanoparticles.

Authors:  Martina Albini; Massimo Salvi; Emiliano Altamura; Simone Dinarelli; Loreto Di Donato; Andrea Lucibello; Fabio Mavelli; Filippo Molinari; Umberto Morbiducci; Alfonsina Ramundo-Orlando
Journal:  Drug Deliv Transl Res       Date:  2019-02       Impact factor: 4.617

7.  Unperturbed hydrocarbon chains and liquid phase bilayer lipid chains: a computer simulation study.

Authors:  Alexander L Rabinovich; Alexander P Lyubartsev; Dmitrii V Zhurkin
Journal:  Eur Biophys J       Date:  2017-07-11       Impact factor: 1.733

8.  Extremely High Frequency Electromagnetic Fields Facilitate Electrical Signal Propagation by Increasing Transmembrane Potassium Efflux in an Artificial Axon Model.

Authors:  Simona D'Agostino; Chiara Della Monica; Eleonora Palizzi; Fabio Di Pietrantonio; Massimiliano Benetti; Domenico Cannatà; Marta Cavagnaro; Dariush Sardari; Pasquale Stano; Alfonsina Ramundo-Orlando
Journal:  Sci Rep       Date:  2018-06-18       Impact factor: 4.379

Review 9.  Understanding the Antibacterial Resistance: Computational Explorations in Bacterial Membranes.

Authors:  Alejandra Matamoros-Recio; Juan Felipe Franco-Gonzalez; Rosa Ester Forgione; Angel Torres-Mozas; Alba Silipo; Sonsoles Martín-Santamaría
Journal:  ACS Omega       Date:  2021-02-26

10.  Hydrogen Bonding Regulates the Rigidity of Liposome-Encapsulated Chlorin Photosensitizers.

Authors:  Martina De Vetta; Leticia González; Juan J Nogueira
Journal:  ChemistryOpen       Date:  2018-06-20       Impact factor: 2.911

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