Literature DB >> 26824414

Statistical Correlations between NMR Spectroscopy and Direct Infusion FT-ICR Mass Spectrometry Aid Annotation of Unknowns in Metabolomics.

Jie Hao1, Manuel Liebeke1, Ulf Sommer2, Mark R Viant2, Jacob G Bundy1, Timothy M D Ebbels1.   

Abstract

NMR spectroscopy and mass spectrometry are the two major analytical platforms for metabolomics, and both generate substantial data with hundreds to thousands of observed peaks for a single sample. Many of these are unknown, and peak assignment is generally complex and time-consuming. Statistical correlations between data types have proven useful in expediting this process, for example, in prioritizing candidate assignments. However, this approach has not been formally assessed for the comparison of direct-infusion mass spectrometry (DIMS) and NMR data. Here, we present a systematic analysis of a sample set (tissue extracts), and the utility of a simple correlation threshold to aid metabolite identification. The correlations were surprisingly successful in linking structurally related signals, with 15 of 26 NMR-detectable metabolites having their highest correlation to a cognate MS ion. However, we found that the distribution of the correlations was highly dependent on the nature of the MS ion, such as the adduct type. This approach should help to alleviate this important bottleneck where both 1D NMR and DIMS data sets have been collected.

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Year:  2016        PMID: 26824414     DOI: 10.1021/acs.analchem.5b02889

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  13 in total

1.  A complete workflow for high-resolution spectral-stitching nanoelectrospray direct-infusion mass-spectrometry-based metabolomics and lipidomics.

Authors:  Andrew D Southam; Ralf J M Weber; Jasper Engel; Martin R Jones; Mark R Viant
Journal:  Nat Protoc       Date:  2017-01-12       Impact factor: 13.491

Review 2.  Salivary metabolomics for the diagnosis of periodontal diseases: a systematic review with methodological quality assessment.

Authors:  Giacomo Baima; Giovanni Iaderosa; Filippo Citterio; Silvia Grossi; Federica Romano; Giovanni N Berta; Nurcan Buduneli; Mario Aimetti
Journal:  Metabolomics       Date:  2021-01-01       Impact factor: 4.290

Review 3.  Recent Advances in NMR-Based Metabolomics.

Authors:  G A Nagana Gowda; Daniel Raftery
Journal:  Anal Chem       Date:  2016-12-02       Impact factor: 6.986

Review 4.  Challenges in Identifying the Dark Molecules of Life.

Authors:  María Eugenia Monge; James N Dodds; Erin S Baker; Arthur S Edison; Facundo M Fernández
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2019-03-18       Impact factor: 10.745

Review 5.  Knowns and unknowns in metabolomics identified by multidimensional NMR and hybrid MS/NMR methods.

Authors:  Kerem Bingol; Rafael Brüschweiler
Journal:  Curr Opin Biotechnol       Date:  2016-08-20       Impact factor: 9.740

6.  Accurate Identification of Unknown and Known Metabolic Mixture Components by Combining 3D NMR with Fourier Transform Ion Cyclotron Resonance Tandem Mass Spectrometry.

Authors:  Cheng Wang; Lidong He; Da-Wei Li; Lei Bruschweiler-Li; Alan G Marshall; Rafael Brüschweiler
Journal:  J Proteome Res       Date:  2017-09-01       Impact factor: 4.466

7.  Accurate and Efficient Determination of Unknown Metabolites in Metabolomics by NMR-Based Molecular Motif Identification.

Authors:  Cheng Wang; Bo Zhang; István Timári; Árpád Somogyi; Da-Wei Li; Haley E Adcox; John S Gunn; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2019-12-03       Impact factor: 6.986

8.  Metabolite patterns predicting sex and age in participants of the Karlsruhe Metabolomics and Nutrition (KarMeN) study.

Authors:  Manuela J Rist; Alexander Roth; Lara Frommherz; Christoph H Weinert; Ralf Krüger; Benedikt Merz; Diana Bunzel; Carina Mack; Björn Egert; Achim Bub; Benjamin Görling; Pavleta Tzvetkova; Burkhard Luy; Ingrid Hoffmann; Sabine E Kulling; Bernhard Watzl
Journal:  PLoS One       Date:  2017-08-16       Impact factor: 3.240

Review 9.  Metabolic Investigations of the Molecular Mechanisms Associated with Parkinson's Disease.

Authors:  Robert Powers; Shulei Lei; Annadurai Anandhan; Darrell D Marshall; Bradley Worley; Ronald L Cerny; Eric D Dodds; Yuting Huang; Mihalis I Panayiotidis; Aglaia Pappa; Rodrigo Franco
Journal:  Metabolites       Date:  2017-05-24

Review 10.  Recent Advances in Targeted and Untargeted Metabolomics by NMR and MS/NMR Methods.

Authors:  Kerem Bingol
Journal:  High Throughput       Date:  2018-04-18
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