Literature DB >> 26822554

Eukaryotic genome instability in light of asymmetric DNA replication.

Scott A Lujan1, Jessica S Williams1, Thomas A Kunkel1.   

Abstract

The eukaryotic nuclear genome is replicated asymmetrically, with the leading strand replicated continuously and the lagging strand replicated as discontinuous Okazaki fragments that are subsequently joined. Both strands are replicated with high fidelity, but the processes used to achieve high fidelity are likely to differ. Here we review recent studies of similarities and differences in the fidelity with which the three major eukaryotic replicases, DNA polymerases α, δ, and ɛ, replicate the leading and lagging strands with high nucleotide selectivity and efficient proofreading. We then relate the asymmetric fidelity at the replication fork to the efficiency of DNA mismatch repair, ribonucleotide excision repair and topoisomerase 1 activity.

Entities:  

Keywords:  DNA mismatch repair; exonucleolytic proofreading; genomic ribonucleotide; mutation; polymerase; replication fork

Mesh:

Substances:

Year:  2015        PMID: 26822554      PMCID: PMC4922258          DOI: 10.3109/10409238.2015.1117055

Source DB:  PubMed          Journal:  Crit Rev Biochem Mol Biol        ISSN: 1040-9238            Impact factor:   8.250


  95 in total

1.  Genetic factors affecting the impact of DNA polymerase delta proofreading activity on mutation avoidance in yeast.

Authors:  H T Tran; N P Degtyareva; D A Gordenin; M A Resnick
Journal:  Genetics       Date:  1999-05       Impact factor: 4.562

2.  Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

Authors:  J D WATSON; F H CRICK
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

3.  Division of labor at the eukaryotic replication fork.

Authors:  Stephanie A Nick McElhinny; Dmitry A Gordenin; Carrie M Stith; Peter M J Burgers; Thomas A Kunkel
Journal:  Mol Cell       Date:  2008-04-25       Impact factor: 17.970

4.  Differences in genome-wide repeat sequence instability conferred by proofreading and mismatch repair defects.

Authors:  Scott A Lujan; Alan B Clark; Thomas A Kunkel
Journal:  Nucleic Acids Res       Date:  2015-03-30       Impact factor: 16.971

5.  Reconsidering DNA Polymerases at the Replication Fork in Eukaryotes.

Authors:  Bruce Stillman
Journal:  Mol Cell       Date:  2015-07-16       Impact factor: 17.970

6.  Analysis of the essential functions of the C-terminal protein/protein interaction domain of Saccharomyces cerevisiae pol epsilon and its unexpected ability to support growth in the absence of the DNA polymerase domain.

Authors:  R Dua; D L Levy; J L Campbell
Journal:  J Biol Chem       Date:  1999-08-06       Impact factor: 5.157

7.  Intrinsic coupling of lagging-strand synthesis to chromatin assembly.

Authors:  Duncan J Smith; Iestyn Whitehouse
Journal:  Nature       Date:  2012-03-14       Impact factor: 49.962

8.  RNase H2-initiated ribonucleotide excision repair.

Authors:  Justin L Sparks; Hyongi Chon; Susana M Cerritelli; Thomas A Kunkel; Erik Johansson; Robert J Crouch; Peter M Burgers
Journal:  Mol Cell       Date:  2012-08-02       Impact factor: 17.970

9.  Reconstitution of a eukaryotic replisome reveals suppression mechanisms that define leading/lagging strand operation.

Authors:  Roxana E Georgescu; Grant D Schauer; Nina Y Yao; Lance D Langston; Olga Yurieva; Dan Zhang; Jeff Finkelstein; Mike E O'Donnell
Journal:  Elife       Date:  2015-04-14       Impact factor: 8.140

10.  Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition.

Authors:  Scott A Lujan; Anders R Clausen; Alan B Clark; Heather K MacAlpine; David M MacAlpine; Ewa P Malc; Piotr A Mieczkowski; Adam B Burkholder; David C Fargo; Dmitry A Gordenin; Thomas A Kunkel
Journal:  Genome Res       Date:  2014-09-12       Impact factor: 9.043

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  5 in total

1.  Overexpression of oncogenic H-Ras in hTERT-immortalized and SV40-transformed human cells targets replicative and specialized DNA polymerases for depletion.

Authors:  Wei-Chung Tsao; Raquel Buj; Katherine M Aird; Julia M Sidorova; Kristin A Eckert
Journal:  PLoS One       Date:  2021-05-07       Impact factor: 3.240

Review 2.  POLD1: Central mediator of DNA replication and repair, and implication in cancer and other pathologies.

Authors:  Emmanuelle Nicolas; Erica A Golemis; Sanjeevani Arora
Journal:  Gene       Date:  2016-06-16       Impact factor: 3.688

3.  Fluorescence detection of DNA mismatch repair in human cells.

Authors:  Shunsuke Ito; Miyako Shiraishi; Kazuki Tsuchihashi; Reine Takatsuka; Junpei Yamamoto; Isao Kuraoka; Shigenori Iwai
Journal:  Sci Rep       Date:  2018-08-15       Impact factor: 4.379

4.  High-fidelity DNA ligation enforces accurate Okazaki fragment maturation during DNA replication.

Authors:  Jessica S Williams; Percy P Tumbale; Mercedes E Arana; Julian A Rana; R Scott Williams; Thomas A Kunkel
Journal:  Nat Commun       Date:  2021-01-20       Impact factor: 14.919

5.  Human mismatch repair system balances mutation rates between strands by removing more mismatches from the lagging strand.

Authors:  Maria A Andrianova; Georgii A Bazykin; Sergey I Nikolaev; Vladimir B Seplyarskiy
Journal:  Genome Res       Date:  2017-05-16       Impact factor: 9.043

  5 in total

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