Literature DB >> 26821259

From barcodes to genomes: extending the concept of DNA barcoding.

Eric Coissac1,2, Peter M Hollingsworth3, Sébastien Lavergne1,2, Pierre Taberlet1,2.   

Abstract

DNA barcoding has had a major impact on biodiversity science. The elegant simplicity of establishing massive scale databases for a few barcode loci is continuing to change our understanding of species diversity patterns, and continues to enhance human abilities to distinguish among species. Capitalizing on the developments of next generation sequencing technologies and decreasing costs of genome sequencing, there is now the opportunity for the DNA barcoding concept to be extended to new kinds of genomic data. We illustrate the benefits and capacity to do this, and also note the constraints and barriers to overcome before it is truly scalable. We advocate a twin track approach: (i) continuation and acceleration of global efforts to build the DNA barcode reference library of life on earth using standard DNA barcodes and (ii) active development and application of extended DNA barcodes using genome skimming to augment the standard barcoding approach.
© 2016 John Wiley & Sons Ltd.

Entities:  

Keywords:  DNA Barcoding; chloroplast DNA; genome skimming; mitochondrial DNA; next-generation DNA sequencing; ribosomal DNA

Mesh:

Year:  2016        PMID: 26821259     DOI: 10.1111/mec.13549

Source DB:  PubMed          Journal:  Mol Ecol        ISSN: 0962-1083            Impact factor:   6.185


  79 in total

1.  From writing to reading the encyclopedia of life.

Authors:  Paul D N Hebert; Peter M Hollingsworth; Mehrdad Hajibabaei
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-09-05       Impact factor: 6.237

2.  Postglacial viability and colonization in North America's ice-free corridor.

Authors:  Mikkel W Pedersen; Anthony Ruter; Charles Schweger; Harvey Friebe; Richard A Staff; Kristian K Kjeldsen; Marie L Z Mendoza; Alwynne B Beaudoin; Cynthia Zutter; Nicolaj K Larsen; Ben A Potter; Rasmus Nielsen; Rebecca A Rainville; Ludovic Orlando; David J Meltzer; Kurt H Kjær; Eske Willerslev
Journal:  Nature       Date:  2016-08-10       Impact factor: 49.962

3.  Assessment of three plastid DNA barcode markers for identification of Clinacanthus nutans (Acanthaceae).

Authors:  Noor Zafirah Ismail; Hasni Arsad; Mohammed Razip Samian; Mohammad Razak Hamdan; Ahmad Sofiman Othman
Journal:  3 Biotech       Date:  2018-01-11       Impact factor: 2.406

4.  APPLES: Scalable Distance-Based Phylogenetic Placement with or without Alignments.

Authors:  Metin Balaban; Shahab Sarmashghi; Siavash Mirarab
Journal:  Syst Biol       Date:  2020-05-01       Impact factor: 15.683

Review 5.  Perspectives and Benefits of High-Throughput Long-Read Sequencing in Microbial Ecology.

Authors:  Leho Tedersoo; Mads Albertsen; Sten Anslan; Benjamin Callahan
Journal:  Appl Environ Microbiol       Date:  2021-08-11       Impact factor: 4.792

6.  Highly degenerate plastomes in two hemiparasitic dwarf mistletoes: Arceuthobium chinense and A. pini (Viscaceae).

Authors:  Xiaorong Guo; Guangfei Zhang; Linyuan Fan; Changkun Liu; Yunheng Ji
Journal:  Planta       Date:  2021-05-24       Impact factor: 4.116

7.  Comparison of intraspecific, interspecific and intergeneric chloroplast diversity in Cycads.

Authors:  Guo-Feng Jiang; Damien Daniel Hinsinger; Joeri Sergej Strijk
Journal:  Sci Rep       Date:  2016-08-25       Impact factor: 4.379

8.  A SNP-Based Molecular Barcode for Characterization of Common Wheat.

Authors:  LiFeng Gao; JiZeng Jia; XiuYing Kong
Journal:  PLoS One       Date:  2016-03-17       Impact factor: 3.240

Review 9.  Telling plant species apart with DNA: from barcodes to genomes.

Authors:  Peter M Hollingsworth; De-Zhu Li; Michelle van der Bank; Alex D Twyford
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-09-05       Impact factor: 6.237

10.  Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects.

Authors:  Vasco Elbrecht; Pierre Taberlet; Tony Dejean; Alice Valentini; Philippe Usseglio-Polatera; Jean-Nicolas Beisel; Eric Coissac; Frederic Boyer; Florian Leese
Journal:  PeerJ       Date:  2016-04-19       Impact factor: 2.984

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