| Literature DB >> 26813790 |
Guangrong Li1, Dan Gao1, Hongjun Zhang1, Jianbo Li1, Hongjin Wang1, Shixiao La1, Jiwei Ma1, Zujun Yang1.
Abstract
BACKGROUND: The uncultivated species Dasypyrum breviaristatum carries novel diseases resistance and agronomically important genes of potential use for wheat improvement. The development of new wheat-D. breviaristatum derivatives lines with disease resistance provides an opportunity for the identification and localization of resistance genes on specific Dasypyrum chromosomes. The comparison of wheat-D. breviaristatum derivatives to the wheat-D. villosum derivatives enables to reveal the genomic divergence between D. breviaristatum and D. villosum.Entities:
Keywords: Dasypyrum breviaristatum; Fluorescence in situ hybridization; Molecular marker; Wheat
Year: 2016 PMID: 26813790 PMCID: PMC4727328 DOI: 10.1186/s13039-016-0217-0
Source DB: PubMed Journal: Mol Cytogenet ISSN: 1755-8166 Impact factor: 2.009
Fig. 1FISH and karyotypes of TDH-2 (a, b, f) and TDV-1(c, d, e). The mitotic metaphase chromosomes (a, c) after hybridization with probes Oligo-pTa535 (red) and Oligo-pSc119.2 (green), or (b, d) hybridized with Oligo-(GAA)7 (red) The boxes shows the modified chromosomes compared to its parents. Figures e and f are hybridized by probe of pHv62-3 (green)
Fig. 2Sequential FISH karyotypes of D2139. Left figure (a) was stained with DAPI (blue), Oligo-pTa535 (red) and Oligo-pSc119.2 (green), while the right figure (b) chromosomes were stained by PI (red) and Oligo-GAA (green). The box shows the modified chromosomes compared to the parent line MY11 (c)
The primers used to localize the Vb7 specific amplification in D2139
| No. | Primers name | Primer sequences (5’–3’) | Wheat bin map | Restriction enzyme | Length of Vb7 bands |
|---|---|---|---|---|---|
| 1 | TNAC1776 | F: ATCATCCTGCTGCTACTGTGC | 7AS2-0.73–0.83 |
| |
| R: CCTTCTCAGCTTAGCGATGTG | 4AL2-0.75–0.80 | ||||
| 7DS4-0.73–1.00 | |||||
| 2 | TNAC1782 | F: TCACTGAACAGCCTAGACATGG | 7AS2-0.73–0.83 |
| 690 bp |
| R: ATTCGCAGACCGCATCTATC | 7BS2-0.27–1.00 | ||||
| 7DS4-0.73–1.00 | |||||
| 3 | TNAC1803 | F: TGCGACCAGTCTCTTTGAAAT | C-7AL1-0.39 |
| 800 bp* |
| R: GTCGGAGCCTGGATCTCTAGT | 7BL2-0.38–0.63 | ||||
| 7DL5-0.30–0.61 | |||||
| 4 | TNAC1806 | F: ATTCCTCGTGAATTGCTGGAT | 7AS8-0.45–0.59 |
| 350 bp* |
| R: TCTGCAGTTAGGGACTTGAAA | 7BS2-0.27–1.00 | ||||
| 7DS2-0.61–0.73 | |||||
| 5 | TNAC1811 | F: CTGCTCAACGAGTTCATCGAC | 7AL1-0.39–0.63 |
| 740 bp |
| R: TTGGAGTGGACGTTGCATT | 7BL2-0.38–0.63 | ||||
| 7DL5-0.30–0.61 | |||||
| 6 | TNAC1812 | F: ACTTCGCTTGGTCTCCTCAAT | 7AL5-0.63–0.71 |
| 860 bp |
| R: GAGAAGTGTGCCAATTCCAAA | 7BL7-0.63–0.78 | ||||
| 7DL5-0.30–0.61 | |||||
| 7 | TNAC1815 | F: AGCAGACATCAGCAAGTTTGAG | 7AL1-0.39–0.63 |
| 600 bp* |
| R: ACTGACAAGCCCATGATTGAC | 7BL2-0.38–0.63 | ||||
| 7DL5-0.30–0.61 | |||||
| 8 | TNAC1822 | F: CCCTCCGTCCGTGCAAAT | 7AL5-0.63–0.71 |
| 730 bp* |
| R: GGCTGATGATGGAGACGTG | 7BL2-0.38–0.63 | ||||
| 7DL2-0.61–0.82 | |||||
| 9 | TNAC1867 | F: GCCTTTCCTTTGGTAGTCTGG | C-7AL1-0.39 |
| 840 bp |
| R: CGATCCAAATGATCCTGAAGA | 7BL2-0.38–0.63 | ||||
| 7DL1-0.14–0.30 | |||||
| 10 | TNAC1903 | F: TCGCTTCTTCTGCTTGTTCTT | C-7AL1–0.39 |
| 920 bp* |
| R: CTGCTACTAGGCCACCCAAA | C-7BL2–0.38 | ||||
| 7DL1-0.14–0.30 | |||||
| 11 | TNAC1926 | F: CGTCAGCTACAGCGACATCTA | C-7AS8–0.45 |
| 700 bp* |
| R: AACTTGAGCAGCGTGGTGTT | 7BS2-0.27–1.00 | ||||
| 7DS3-0.15–0.36 | |||||
| 12 | TNAC1943 | F: GCTGCTATGGTCCACGAATTA | 7AS5-0.59–0.73 |
| 600 bp* |
| R: AGAGTATCGTATCCGGGCAAT | 7BS2-0.27–1.00 | ||||
| 7DS4-0.73–1.00 | |||||
| 13 | TNAC1957 | F: TCAACATTTGCAGGATTGTCA | 7AL21-0.74–0.86 |
| 730 bp |
| R: TTTCACAGGAACCTCTGCATC | 7BL10-0.78–0.84 | ||||
| 7DL2-0.61–0.82 |
The primers and the location in wheat bin map were referred to Ishikawa et al. [18]. The star indicated the Vb7 specific bands were polymorphic to 7V band
Fig. 3PCR using PLUG primers TNAC1782/HaeIII (a), TNAC1811/TaqI (b), TNAC1812/TaqI (c) and TNAC1867 (d). The stars and arrows indicate the D. breviaristatum specific bands in TDH-2 and D2139, respectively
Fig. 4The spikes morphology (a) and leaf response to stripe rust (b) of the lines