Literature DB >> 24782110

Oligonucleotides replacing the roles of repetitive sequences pAs1, pSc119.2, pTa-535, pTa71, CCS1, and pAWRC.1 for FISH analysis.

Zongxiang Tang1, Zujun Yang, Shulan Fu.   

Abstract

Hybrids derived from wheat (Triticum aestivum L.) × rye (Secale cereale L.) have been widely studied because of their important roles in wheat cultivar improvement. Repetitive sequences pAs1, pSc119.2, pTa-535, pTa71, CCS1, and pAWRC.1 are usually used as probes in fluorescence in situ hybridization (FISH) analysis of wheat, rye, and hybrids derived from wheat × rye. Usually, some of these repetitive sequences for FISH analysis were needed to be amplified from a bacterial plasmid, extracted from bacterial cells, and labeled by nick translation. Therefore, the conventional procedure of probe preparation using these repetitive sequences is time-consuming and labor-intensive. In this study, some appropriate oligonucleotide probes have been developed which can replace the roles of repetitive sequences pAs1, pSc119.2, pTa-535, pTa71, CCS1, and pAWRC.1 in FISH analysis of wheat, rye, and hybrids derived from wheat × rye. These oligonucleotides can be synthesized easily and cheaply. Therefore, FISH analysis of wheat and hybrids derived from wheat × rye using these oligonucleotide probes becomes easier and more economical.

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Year:  2014        PMID: 24782110     DOI: 10.1007/s13353-014-0215-z

Source DB:  PubMed          Journal:  J Appl Genet        ISSN: 1234-1983            Impact factor:   3.240


  34 in total

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Authors:  C Ribeiro-Carvalho; H Guedes-Pinto; J S Heslop-Harrison; T Schwarzacher
Journal:  Genome       Date:  2001-12       Impact factor: 2.166

2.  Identification of Bilby, a diverged centromeric Ty1-copia retrotransposon family from cereal rye (Secale cereale L.).

Authors:  M G Francki
Journal:  Genome       Date:  2001-04       Impact factor: 2.166

3.  Improved telomere detection using a telomere repeat probe (TTAGGG)n generated by PCR.

Authors:  J W Ijdo; R A Wells; A Baldini; S T Reeders
Journal:  Nucleic Acids Res       Date:  1991-09-11       Impact factor: 16.971

4.  Identifying crossover-rich regions and their effect on meiotic homologous interactions by partitioning chromosome arms of wheat and rye.

Authors:  Nohelia T Valenzuela; Esther Perera; Tomás Naranjo
Journal:  Chromosome Res       Date:  2013-07-11       Impact factor: 5.239

5.  Single-copy gene fluorescence in situ hybridization and genome analysis: Acc-2 loci mark evolutionary chromosomal rearrangements in wheat.

Authors:  Tatiana V Danilova; Bernd Friebe; Bikram S Gill
Journal:  Chromosoma       Date:  2012-10-02       Impact factor: 4.316

6.  Alteration of terminal heterochromatin and chromosome rearrangements in derivatives of wheat-rye hybrids.

Authors:  Shulan Fu; Zhenling Lv; Xiang Guo; Xiangqi Zhang; Fangpu Han
Journal:  J Genet Genomics       Date:  2013-06-10       Impact factor: 4.275

7.  High frequency of centromere inactivation resulting in stable dicentric chromosomes of maize.

Authors:  Fangpu Han; Jonathan C Lamb; James A Birchler
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-21       Impact factor: 11.205

8.  Variations of tandem repeat, regulatory element, and promoter regions revealed by wheat-rye amphiploids.

Authors:  Zong-Xiang Tang; Shu-Lan Fu; Zheng-Long Ren; Jian-Ping Zhou; Ben-Ju Yan; Huai-Qiong Zhang
Journal:  Genome       Date:  2008-06       Impact factor: 2.166

9.  Characterization of a leaf rust-resistant wheat-Thinopyrum ponticum partial amphiploid BE-1, using sequential multicolor GISH and FISH.

Authors:  A Sepsi; I Molnár; D Szalay; M Molnár-Láng
Journal:  Theor Appl Genet       Date:  2008-01-26       Impact factor: 5.699

10.  Genetic and epigenetic variations induced by wheat-rye 2R and 5R monosomic addition lines.

Authors:  Shulan Fu; Chuanfei Sun; Manyu Yang; Yunyan Fei; Feiqun Tan; Benju Yan; Zhenglong Ren; Zongxiang Tang
Journal:  PLoS One       Date:  2013-01-14       Impact factor: 3.240

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  105 in total

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Authors:  Jie Zhang; Yun Jiang; Pu Xuan; Yuanlin Guo; Guangbing Deng; Maoqun Yu; Hai Long
Journal:  Genetica       Date:  2017-06-21       Impact factor: 1.082

2.  Development, identification, and characterization of blue-grained wheat-Triticum boeoticum substitution lines.

Authors:  Xin Liu; Zhen Feng; Dongyu Liang; Minghu Zhang; Xiaojuan Liu; Ming Hao; Dengcai Liu; Shunzong Ning; Zhongwei Yuan; Bo Jiang; Xuejiao Chen; Xue Chen; Lianquan Zhang
Journal:  J Appl Genet       Date:  2020-02-18       Impact factor: 3.240

Review 3.  Fluorescence in situ hybridization in plants: recent developments and future applications.

Authors:  Jiming Jiang
Journal:  Chromosome Res       Date:  2019-03-09       Impact factor: 5.239

4.  Sympatric speciation of wild emmer wheat driven by ecology and chromosomal rearrangements.

Authors:  Hongwei Wang; Huayan Yin; Chengzhi Jiao; Xiaojian Fang; Guiping Wang; Guangrong Li; Fei Ni; Penghuan Li; Peisen Su; Wenyang Ge; Zhongfan Lyu; Shoushen Xu; Yanhong Yang; Yongchao Hao; Xinxin Cheng; Jinxiao Zhao; Cheng Liu; Fengfeng Xu; Xin Ma; Silong Sun; Yan Zhao; Yinguang Bao; Cheng Liu; Jingjing Zhang; Tomas Pavlicek; Anfei Li; Zujun Yang; Eviatar Nevo; Lingrang Kong
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-02       Impact factor: 11.205

5.  Molecular cytogenetic characterization of a new wheat-rye 1BL•1RS translocation line expressing superior stripe rust resistance and enhanced grain yield.

Authors:  Weiliang Qi; Yao Tang; Wei Zhu; Daiyan Li; Chengdou Diao; Lili Xu; Jian Zeng; Yi Wang; Xing Fan; Lina Sha; Haiqin Zhang; Youliang Zheng; Yonghong Zhou; Houyang Kang
Journal:  Planta       Date:  2016-04-15       Impact factor: 4.116

6.  New molecular markers and cytogenetic probes enable chromosome identification of wheat-Thinopyrum intermedium introgression lines for improving protein and gluten contents.

Authors:  Guangrong Li; Hongjin Wang; Tao Lang; Jianbo Li; Shixiao La; Ennian Yang; Zujun Yang
Journal:  Planta       Date:  2016-06-11       Impact factor: 4.116

7.  Characterization of wheat-Secale africanum chromosome 5R(a) derivatives carrying Secale specific genes for grain hardness.

Authors:  Guangrong Li; Dan Gao; Shixiao La; Hongjin Wang; Jianbo Li; Weilin He; Ennian Yang; Zujun Yang
Journal:  Planta       Date:  2016-02-16       Impact factor: 4.116

8.  Deletion mapping and verification of an enhanced-grain number per spike locus from the 6PL chromosome arm of Agropyron cristatum in common wheat.

Authors:  Zhi Zhang; Haiming Han; Weihua Liu; Liqiang Song; Jinpeng Zhang; Shenghui Zhou; Xinming Yang; Xiuquan Li; Lihui Li
Journal:  Theor Appl Genet       Date:  2019-07-15       Impact factor: 5.699

9.  Recombination between homoeologous chromosomes induced in durum wheat by the Aegilops speltoides Su1-Ph1 suppressor.

Authors:  Hao Li; Le Wang; Ming-Cheng Luo; Fang Nie; Yun Zhou; Patrick E McGuire; Assaf Distelfeld; Xiongtao Dai; Chun-Peng Song; Jan Dvorak
Journal:  Theor Appl Genet       Date:  2019-09-16       Impact factor: 5.699

10.  Physical mapping of the blue-grained gene from Thinopyrum ponticum chromosome 4Ag and development of blue-grain-related molecular markers and a FISH probe based on SLAF-seq technology.

Authors:  Liqin Liu; Qiaoling Luo; Hongwei Li; Bin Li; Zhensheng Li; Qi Zheng
Journal:  Theor Appl Genet       Date:  2018-08-20       Impact factor: 5.699

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