Literature DB >> 26802288

Insulators and domains of gene expression.

Tamer Ali1, Rainer Renkawitz2, Marek Bartkuhn1.   

Abstract

The genomic organization into active and inactive chromatin domains imposes specific requirements for having domain boundaries to prohibit interference between the opposing activities of neighbouring domains. These boundaries provide an insulator function by binding architectural proteins that mediate long-range interactions. Among these, CTCF plays a prominent role in establishing chromatin loops (between pairs of CTCF binding sites) through recruiting cohesin. CTCF-mediated long-range interactions are integral for a multitude of topological features of interphase chromatin, such as the formation of topologically associated domains, domain insulation, enhancer blocking and even enhancer function.
Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

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Year:  2016        PMID: 26802288     DOI: 10.1016/j.gde.2015.11.009

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  59 in total

1.  Overlapping but Distinct Sequences Play Roles in the Insulator and Promoter Activities of the Drosophila BEAF-Dependent scs' Insulator.

Authors:  Mukesh Maharjan; J Keller McKowen; Craig M Hart
Journal:  Genetics       Date:  2020-06-17       Impact factor: 4.562

2.  Architectural protein Pita cooperates with dCTCF in organization of functional boundaries in Bithorax complex.

Authors:  Olga Kyrchanova; Nikolay Zolotarev; Vladic Mogila; Oksana Maksimenko; Paul Schedl; Pavel Georgiev
Journal:  Development       Date:  2017-06-15       Impact factor: 6.868

3.  Chrna5-Expressing Neurons in the Interpeduncular Nucleus Mediate Aversion Primed by Prior Stimulation or Nicotine Exposure.

Authors:  Glenn Morton; Nailyam Nasirova; Daniel W Sparks; Matthew Brodsky; Sanghavy Sivakumaran; Evelyn K Lambe; Eric E Turner
Journal:  J Neurosci       Date:  2018-06-28       Impact factor: 6.167

4.  Distinct Elements Confer the Blocking and Bypass Functions of the Bithorax Fab-8 Boundary.

Authors:  Olga Kyrchanova; Daniel Wolle; Marat Sabirov; Amina Kurbidaeva; Tsutomu Aoki; Oksana Maksimenko; Maria Kyrchanova; Pavel Georgiev; Paul Schedl
Journal:  Genetics       Date:  2019-09-24       Impact factor: 4.562

5.  Establishment of expression-state boundaries by Rif1 and Taz1 in fission yeast.

Authors:  Tea Toteva; Bethany Mason; Yutaka Kanoh; Peter Brøgger; Daniel Green; Janne Verhein-Hansen; Hisao Masai; Geneviève Thon
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-17       Impact factor: 11.205

6.  Intranuclear and higher-order chromatin organization of the major histone gene cluster in breast cancer.

Authors:  Andrew J Fritz; Prachi N Ghule; Joseph R Boyd; Coralee E Tye; Natalie A Page; Deli Hong; David J Shirley; Adam S Weinheimer; Ahmet R Barutcu; Diana L Gerrard; Seth Frietze; Andre J van Wijnen; Sayyed K Zaidi; Anthony N Imbalzano; Jane B Lian; Janet L Stein; Gary S Stein
Journal:  J Cell Physiol       Date:  2017-06-22       Impact factor: 6.384

7.  Ordered patterning of the sensory system is susceptible to stochastic features of gene expression.

Authors:  Ritika Giri; Dimitrios K Papadopoulos; Diana M Posadas; Hemanth K Potluri; Pavel Tomancak; Madhav Mani; Richard W Carthew
Journal:  Elife       Date:  2020-02-26       Impact factor: 8.140

8.  Complete reconstitution of bypass and blocking functions in a minimal artificial Fab-7 insulator from Drosophila bithorax complex.

Authors:  Olga Kyrchanova; Marat Sabirov; Vladic Mogila; Amina Kurbidaeva; Nikolay Postika; Oksana Maksimenko; Paul Schedl; Pavel Georgiev
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-17       Impact factor: 11.205

9.  EAST affects the activity of Su(Hw) insulators by two different mechanisms in Drosophila melanogaster.

Authors:  Larisa Melnikova; Igor Shapovalov; Margarita Kostyuchenko; Pavel Georgiev; Anton Golovnin
Journal:  Chromosoma       Date:  2016-04-30       Impact factor: 4.316

10.  Architectural proteins Pita, Zw5,and ZIPIC contain homodimerization domain and support specific long-range interactions in Drosophila.

Authors:  Nikolay Zolotarev; Anna Fedotova; Olga Kyrchanova; Artem Bonchuk; Aleksey A Penin; Andrey S Lando; Irina A Eliseeva; Ivan V Kulakovskiy; Oksana Maksimenko; Pavel Georgiev
Journal:  Nucleic Acids Res       Date:  2016-05-02       Impact factor: 16.971

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