| Literature DB >> 26801762 |
Rasa Ruseckaite1, Kerri Beckmann2, Michael O'Callaghan3,4,5, David Roder6, Kim Moretti7, John Zalcberg8, Jeremy Millar9, Sue Evans10.
Abstract
BACKGROUND: Prostate cancer is the most commonly diagnosed and prevalent malignancy reported to Australian cancer registries, with numerous studies from single institutions summarizing patient outcomes at individual hospitals or States. In order to provide an overview of patterns of care of men with prostate cancer across multiple institutions in Australia, a specialized dataset was developed. This dataset, containing amalgamated data from South Australian and Victorian prostate cancer registries, is called the South Australian-Victorian Prostate Cancer Health Outcomes Research Dataset (SA-VIC PCHORD).Entities:
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Year: 2016 PMID: 26801762 PMCID: PMC4724115 DOI: 10.1186/s13104-016-1855-3
Source DB: PubMed Journal: BMC Res Notes ISSN: 1756-0500
A detailed description of SA-PCHORD variables according to the information categories, type and completeness of the data
| Information category | Existing variable | New variable | Value label | Variable type | Value categories | Completeness (%) |
|---|---|---|---|---|---|---|
| Patient | Patient identification number | Randomly generated patient identification number | Numeric | 100 | ||
| State | State identification | Categorical | [VIC; SA] | 100 | ||
| Age at diagnosis | Patient’s age at diagnosis, derived from date of birth | Numeric | 100 | |||
| Age groups | Ten year age groups, derived from age at diagnosis | Categorical | [<55; 55–65; 66–75; >75] | 100 | ||
| Date of death | Date of death | Date | NA | |||
| Postcode of residence | Postcode of residence | Numeric | 97.6 | |||
| SEIFA score | Postcode of residence linked with SEIFA-2011 | Numeric | 97.6 | |||
| SEIFA decile | Postcode of Residence linked with SEIFA-2011 | Categorical | [1..10] | 97.6 | ||
| Diagnosis | Date of diagnosis | Date of diagnosis | Date | 100 | ||
| Year of diagnosis | Derived from date of diagnosis | Numeric | 100 | |||
| Diagnosis procedure type | Biopsy type | Categorical | [TRUS; TURP; other] | 96.9 | ||
| PSA at diagnosis | PSA levels at diagnosis | Numeric | 86.6 | |||
| Gleason primary score | Biopsy Gleason primary score at diagnosis | Numeric | 92.9 | |||
| Gleason secondary score | Biopsy Gleason secondary score at diagnosis | Numeric | 92.8 | |||
| Gleason tertiary score | Biopsy Gleason tertiary score at diagnosis | Numeric | 89.6 | |||
| Gleason total score | Biopsy Gleason total score at diagnosis | Numeric | 97.5 | |||
| Biopsy number | Biopsy number to identify multiple biopsies | Numeric | 100 | |||
| Biopsy type | Biopsy type | Categorical | [TRUS; TURP; TURBT; transperineal biopsy; clinical investigation (e.g. bone scan, CT, MRI); histology of metastatic site (bone biopsy or lymph node biopsy); prostatectomy (simple, diagnostic); other; unknown] | 97.4 | ||
| Biopsy date | Biopsy date | Date | 100 | |||
| Total number of cores | Total number of cores taken | Numeric | 78.1 | |||
| Total number of positive cores | Total number of positive cores | Numeric | 78.1 | |||
| Gleason primary score | Biopsy Gleason primary score for each biopsy | Numeric | 89.7 | |||
| Gleason secondary score | Biopsy Gleason secondary score for each biopsy | Numeric | 89.5 | |||
| Gleason tertiary score | Biopsy Gleason tertiary score for each biopsy | Numeric | NA | |||
| Gleason total score | Biopsy Gleason total score for each biopsy | Numeric | 93.8 | |||
| Perineural invasion | Perineural invasion flag | Categorical | [Yes; no] | 100 | ||
| Lymphovascular invasion | Lymphovascular invasion flag | Categorical | [Yes; no] | 100 | ||
| T-stage at diagnosis | T-stage at diagnosis | Categorical | [TX (cannot be assessed);T0; T1; T1a; T1b; T1c; T2 l; T2a; T2b; T2c; T3; T3a; T3b; T4; T4a; T4b] | 53.4 | ||
| N-stage at diagnosis | N-stage at diagnosis | Categorical | [NX (cannot be assessed); N0; N1; inconclusive] | 63.7 | ||
| M-stage at diagnosis | M-stage at diagnosis | Categorical | [MX (cannot be assessed); M0; M1a; M1b; M1c; inconclusive] | 63.7 | ||
| NCCN | NCCN stage calculated according to the formula from clinical T-stage, PSA level and Gleason score at diagnosis | Categorical | [Low; intermediate; high; very high; metastatic] | 92.4 | ||
| Treatment | Treatment type | First treatment type | Categorical | [AA; ADT; Brachytherapy; Chemotherapy; EBRT; HDR; LDR; RALRP; low dose agonists; ORPR other; recent biopsy; WW] | 93 | |
| Treatment date | First treatment date | Date | 93 | |||
| Treatment group | Treatment group derived from treatment type | Categorical | [Surgery; radiation therapy; ADT; AS, WW; other; unknown] | 92.8 | ||
| Time to the first treatment | Time (days) to the first treatment, derived from date of diagnosis and date of first treatment | Numeric | 72.5 | |||
| Radiotherapy | N = 38,052 | |||||
| Radiotherapy type | Type of radiotherapy received, can be multiple treatments | Categorical | [EBRT radical; EBRT palliative; brachytherapy] | (100) | ||
| Start radiotherapy date | Date of start radiotherapy | Date | 100 | |||
| Dose | Dose (amount) of radiotherapy | Numeric | 32.9 | |||
| Fractions | Fractions of radiotherapy given | Numeric | 29.7 | |||
| Dose rate | Type of dose of radiotherapy | Categorical | [LDR; HDR] | 21.7 | ||
| Surgery | N = 5874 | |||||
| Operation date | Date of operation | Date | ||||
| Operation type | Type of the operation | Categorical | [RALRP; laparoscopic radical; ORPR; other] | (97.8) | ||
| Gleason primary score | Gleason primary score at operation | Numeric | 96.4 | |||
| Gleason secondary score | Gleason secondary score at operation | Numeric | 96.4 | |||
| Gleason tertiary score | Gleason tertiary score at operation | Numeric | 10.5 | |||
| Gleason total score | Gleason total score at operation | Numeric | 96.4 | |||
| Extraprostatic invasion | Extraprostatic invasion flag | Categorical | [Yes; no] | 97.7 | ||
| Perineural invasion | Perineural invasion flag | Categorical | [Yes; no] | 97.7 | ||
| Lymphovascular invasion | Lymphovascular invasion flag | Categorical | [Yes; no] | 99.1 | ||
| Post- surgery pathology T | Post-surgery pathology T stage | Categorical | [TX (cannot be assessed);T0; T1; T1a; T1b; T1c; T2 l; T2a; T2b; T2c; T3; T3a; T3b; T4; T4a; T4b]- T4b | 97 | ||
| Post- surgery pathology N | Post-surgery pathology N stage | Categorical | [NX (cannot be assessed); N0; N1; inconclusive] | 96 | ||
| Seminal vesical invasion | Seminal vesical invasion flag | Categorical | [Yes; No] | 95.7 | ||
| Margin status | Pathological margins status | Categorical | [Present; absent; abuts margin; equivocal] | 96.5 | ||
| ADT | Type of treatment | Type of hormones prescribed | Categorical | [Chemical; surgical] | N = 2734 (99.7) | |
| Start date | Start date of hormones treatment | Date | 100 | |||
| Class | Type/class of hormones | Categorical | [Palliative; adjuvant] | 100 | ||
| Chemotherapy | Chemo agent | Chemotherapy treatment flag | Categorical | [Yes; no] | N = 70 | |
| Chemo start date | Start of chemotherapy treatment | Date | 100 | |||
| Other treatment | Other treatment type | Categorical | [AS; WW; No treatment] | N = 2602 | ||
| Other treatment date | Date | 15 (VIC–NA) | ||||
| PSA | Other treatment type | |||||
| Additional/subsequent/secondary treatment type | Date of other/additional treatment | Categorical | [AA; ADT; Brachytherapy; chemotherapy; EBRT; HDR; LDR; RALRP; low dose agonists; ORRP; other; recent biopsy; WW] | N = 12,039 (100) | ||
| Treatment group | Treatment group derived from treatment type | Categorical | [Surgery; radiation therapy; hormones; AS/WW; other; unknown] | 100 | ||
| Treatment date | Treatment date | Date | 100 | |||
| PSA available | PSA available flag | Categorical | [Yes; no] | 100 | ||
| PSA date | Date of PSA taken | Date | 95.3 | |||
| PSA value | PSA value at treatment | Numeric | 94.5 |