| Literature DB >> 26798500 |
N V Anufrieva1, E A Morozova1, V V Kulikova1, N P Bazhulina1, I V Manukhov2, D I Degtev2, E Yu Gnuchikh2, A N Rodionov1, G B Zavilgelsky2, T V Demidkina1.
Abstract
The problem of resistance to antibiotics requires the development of new classes of broad-spectrum antimicrobial drugs. The concept of pro-drugs allows researchers to look for new approaches to obtain effective drugs with improved pharmacokinetic and pharmacodynamic properties. Thiosulfinates, formed enzymatically from amino acid sulfoxides upon crushing cells of genus Allium plants, are known as antimicrobial compounds. The instability and high reactivity of thiosulfinates complicate their use as individual antimicrobial compounds. We propose a pharmacologically complementary pair: an amino acid sulfoxide pro-drug and vitamin B6 - dependent methionine γ-lyase, which metabolizes it in the patient's body. The enzyme catalyzes the γ- and β-elimination reactions of sulfoxides, analogues of L-methionine and L-cysteine, which leads to the formation of thiosulfinates. In the present work, we cloned the enzyme gene from Clostridium sporogenes. Ionic and tautomeric forms of the internal aldimine were determined by lognormal deconvolution of the holoenzyme spectrum and the catalytic parameters of the recombinant enzyme in the γ- and β-elimination reactions of amino acids, and some sulfoxides of amino acids were obtained. For the first time, the possibility of usage of the enzyme for effective conversion of sulfoxides was established and the antimicrobial activity of thiosulfinates against Gram-negative and Gram-positive bacteria in situ was shown.Entities:
Keywords: Gram-positive and Gram-negative bacteria; Pro-drugs; allicin; alliin; cloning of Clostridium sporogenes methionine γ-lyase gene; sulfoxides of amino acids; vitamin B6-dependent enzymes
Year: 2015 PMID: 26798500 PMCID: PMC4717258
Source DB: PubMed Journal: Acta Naturae ISSN: 2075-8251 Impact factor: 1.845
Kinetic parameters of the γ- and β-elimination reactions*
| Substrate | C. sporogenes MGL | C. sporogenes His-tag | C. freundii MGL*** | P. putida MGL**** | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| kcat, | KM, | kcat/KM | kcat, | KM, | kcat/KM | kcat, | KM, | kcat/KM | kcat, | KM, | kcat/KM | |
| L-Met | 21.61 | 0.60 | 3.60 × 104 | 9.86 | 0.43 | 2.28 × 104 | 6.2 | 0.7 | 8.85 × 103 | 48.6 | 0.90 | 5.4 × 104 |
| (±)-L-MetO | 21.66 | 11.39 | 1.90 × 103 | 8.59 | 7.89 | 1.09 × 103 | 8.12 | 4.65 | 1.75 × 103 | - | - | - |
| S-Et-L-Hcy | 21.31 | 0.24 | 8.87 × 104 | 7.05 | 0.27 | 2.54 × 104 | 6.78 | 0.54 | 1.25 × 104 | 33.4 | 0.27 | 1.23 × 105 |
| (±)-S-Et-L-HcyO | 0.48 | 0.60 | 8.0 × 102 | - | - | - | - | - | - | - | - | - |
| O-Ac-L-Hse | 37.26 | 3.18 | 1.17 × 104 | - | - | - | 2.1 | 2.91 | 2.91 7.21 × 102 | 78.0 | 2.22 | 3.51 × 104 |
| S-Et-L-Cys | 6.53 | 0.43 | 1.52 × 104 | 6.3 | 0.358 | 1.76 × 104 | 5.03 | 0.17 | 2.96 × 104 | 5.79 | 0.48 | 1.21 × 104 |
| (±)-S-Et-L-CysO | 1.39 | 0.33 | 4.21 × 103 | - | - | - | - | - | - | - | - | - |
| O-Ac-L-Ser | 5.31 | 8.01 | 6.6 × 10 | - | - | - | 2.13 | 4.28 | 4.98 × 102 | - | - | - |
| (±)-Alliin | 11.43 | 1.43 | 7.99 × 103 | - | - | - | 5.9 | 4.7 | 1.26 × 103 | - | - | - |
*The error did not exceed 10%.
**Data from [25].
***Data from [2, 23, 33].
****Data from [37].
Inhibition of the γ-elimination reaction of L-methionine*
| Amino | Ki, mM | ||
|---|---|---|---|
| C. freundii** | C. sporogenes | P. putida*** | |
| L-Ala | 3.4 | 1.5 | 5.1 |
| L-Abu | 8.3 | 2.0 | 8.4 |
| L-Nva | 4.7 | 1.9 | 3.0 |
| L-Nle | 0.6 | 0.37 | 0.5 |
* The error did not exceed 10%.
** Data from [23].
*** Data from [43].
Parameters of the absorption spectrum bands of the internal aldimine C. sporogenes MGL
| Structure | E, eV | ν × 10-3, cm-1 | λ, nm | ε × 10-3, M-1cm-1 | W × 10-3, cm-1 | ρ | f | n, % |
|---|---|---|---|---|---|---|---|---|
| II1 | 2.92 | 23.53 | 425.0 | 10.46 | 3.58 | 1.58 | 0.22 | 64.7 |
| II | 3.24 | 26.15 | 382.4 | 7.76 | 4.00 | 1.37 | 0.02 | 7.5 |
| I | 3.63 | 29.28 | 341.5 | 9.44 | 3.65 | 1.23 | 0.03 | 10.0 |
| II┴ | 3.79 | 30.56 | 327.2 | 10.27 | 3.47 | 1.29 | 0.01 | 5.6 |
| II2* | 4.28 | 34.55 | 289.4 | 5.98 | 5.06 | 1.20 | 0.18 | |
| * | 4.46 | 35.99 | 277.9 | 6.70 | 4.70 | 1.50 | 0.26 |
E, electron transition energy; ν, wave number; λ, wavelength; ε, molar absorption coefficient; W, half–width; ρ, asymmetry; f, oscillator force; n, contents of tautomers and conformers. The content of PLP in the enzyme is 87.8%.
* Experimental information about these bands is insufficient. Above-line indices (1, 2) correspond to the first and second electron transitions of structure II. Above-line indices (┴, < ) correspond to two conformers of structure II (the conformer with the aldimine group in the plane perpendicular to the pyridine cycle plane and the conformer with the aldimine bond released from the coenzyme ring plane but with retained coupling and a hydrogen bond between the aldimine nitrogen atom and the coenzyme 3’-oxygroup).
Inhibition of cell culture by mixtures containing MGL and sulfoxides of amino acids
| Amino acid sulfoxide | Inhibition zone, mm2 | |||
|---|---|---|---|---|
| C. freundii MGL | C. sporogenes MGL | |||
| C. freundii | S. aureus | C. freundii | S. aureus | |
| (±)-Alliin | 380 | 754 | 254 | 754 |
| (±)-L-MetO | 452 | 491 | 177 | 227 |
| (±)-S-Et-L-CysO | 314 | 491 | 254 | 314 |
| (±)-S-Et-L-HcyO | 254 | 415 | 227 | 227 |