Literature DB >> 26797457

Isolation and cultivation of naive-like human pluripotent stem cells based on HERVH expression.

Jichang Wang1, Manvendra Singh1, Chuanbo Sun1, Daniel Besser1, Alessandro Prigione1, Zoltán Ivics2, Laurence D Hurst3, Zsuzsanna Izsvák1.   

Abstract

The ability to derive and stably maintain ground-state human pluripotent stem cells (hPSCs) that resemble the cells seen in vivo in the inner cell mass has the potential to be an invaluable tool for researchers developing stem cell-based therapies. To date, derivation of human naive-like pluripotent stem cell lines has been limited to a small number of lineages, and their long-term culturing remains problematic. We describe a protocol for genetic and phenotypic tagging, selecting and maintaining naive-like hPSCs. We tag hPSCs by GFP, expressed by the long terminal repeat (LTR7) of HERVH endogenous retrovirus. This simple and efficient protocol has been reproduced with multiple hPSC lines, including embryonic and induced pluripotent stem cells, and it takes ∼6 weeks. By using the reporter, homogeneous hPSC cultures can be derived, characterized and maintained for the long term by repeated re-sorting and re-plating steps. The HERVH-expressing cells have a similar, but nonidentical, expression pattern to other naive-like cells, suggesting that alternative pluripotent states might exist.

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Year:  2016        PMID: 26797457     DOI: 10.1038/nprot.2016.016

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  63 in total

1.  Epigenetic dynamics of imprinted X inactivation during early mouse development.

Authors:  Ikuhiro Okamoto; Arie P Otte; C David Allis; Danny Reinberg; Edith Heard
Journal:  Science       Date:  2003-12-11       Impact factor: 47.728

2.  Reactivation of the paternal X chromosome in early mouse embryos.

Authors:  Winifred Mak; Tatyana B Nesterova; Mariana de Napoles; Ruth Appanah; Shinya Yamanaka; Arie P Otte; Neil Brockdorff
Journal:  Science       Date:  2004-01-30       Impact factor: 47.728

3.  Long-term reinfection of the human genome by endogenous retroviruses.

Authors:  Robert Belshaw; Vini Pereira; Aris Katzourakis; Gillian Talbot; Jan Paces; Austin Burt; Michael Tristem
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-25       Impact factor: 11.205

4.  The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity.

Authors:  Xinyi Lu; Friedrich Sachs; LeeAnn Ramsay; Pierre-Étienne Jacques; Jonathan Göke; Guillaume Bourque; Huck-Hui Ng
Journal:  Nat Struct Mol Biol       Date:  2014-03-30       Impact factor: 15.369

5.  Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells.

Authors:  Jichang Wang; Gangcai Xie; Manvendra Singh; Avazeh T Ghanbarian; Tamás Raskó; Attila Szvetnik; Huiqiang Cai; Daniel Besser; Alessandro Prigione; Nina V Fuchs; Gerald G Schumann; Wei Chen; Matthew C Lorincz; Zoltán Ivics; Laurence D Hurst; Zsuzsanna Izsvák
Journal:  Nature       Date:  2014-10-15       Impact factor: 49.962

6.  Common physical properties of DNA affecting target site selection of sleeping beauty and other Tc1/mariner transposable elements.

Authors:  Thomas J Vigdal; Christopher D Kaufman; Zsuzsanna Izsvák; Daniel F Voytas; Zoltán Ivics
Journal:  J Mol Biol       Date:  2002-10-25       Impact factor: 5.469

7.  Divergent reprogramming routes lead to alternative stem-cell states.

Authors:  Peter D Tonge; Andrew J Corso; Claudio Monetti; Samer M I Hussein; Mira C Puri; Iacovos P Michael; Mira Li; Dong-Sung Lee; Jessica C Mar; Nicole Cloonan; David L Wood; Maely E Gauthier; Othmar Korn; Jennifer L Clancy; Thomas Preiss; Sean M Grimmond; Jong-Yeon Shin; Jeong-Sun Seo; Christine A Wells; Ian M Rogers; Andras Nagy
Journal:  Nature       Date:  2014-12-11       Impact factor: 49.962

8.  Derivation of naive human embryonic stem cells.

Authors:  Carol B Ware; Angelique M Nelson; Brigham Mecham; Jennifer Hesson; Wenyu Zhou; Erica C Jonlin; Antonio J Jimenez-Caliani; Xinxian Deng; Christopher Cavanaugh; Savannah Cook; Paul J Tesar; Jeffrey Okada; Lilyana Margaretha; Henrik Sperber; Michael Choi; C Anthony Blau; Piper M Treuting; R David Hawkins; Vincenzo Cirulli; Hannele Ruohola-Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-12       Impact factor: 11.205

9.  Resetting transcription factor control circuitry toward ground-state pluripotency in human.

Authors:  Yasuhiro Takashima; Ge Guo; Remco Loos; Jennifer Nichols; Gabriella Ficz; Felix Krueger; David Oxley; Fatima Santos; James Clarke; William Mansfield; Wolf Reik; Paul Bertone; Austin Smith
Journal:  Cell       Date:  2014-09-11       Impact factor: 41.582

10.  Systematic identification of culture conditions for induction and maintenance of naive human pluripotency.

Authors:  Thorold W Theunissen; Benjamin E Powell; Haoyi Wang; Maya Mitalipova; Dina A Faddah; Jessica Reddy; Zi Peng Fan; Dorothea Maetzel; Kibibi Ganz; Linyu Shi; Tenzin Lungjangwa; Sumeth Imsoonthornruksa; Yonatan Stelzer; Sudharshan Rangarajan; Ana D'Alessio; Jianming Zhang; Qing Gao; Meelad M Dawlaty; Richard A Young; Nathanael S Gray; Rudolf Jaenisch
Journal:  Cell Stem Cell       Date:  2014-07-24       Impact factor: 24.633

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  15 in total

1.  When Myc's asleep, embryonic stem cells are dormant.

Authors:  Masato Nakagawa; Peter Karagiannis; Shinya Yamanaka
Journal:  EMBO J       Date:  2016-03-10       Impact factor: 11.598

2.  Differentiation of Mouse Embryonic Stem Cells into Cortical Interneuron Precursors.

Authors:  David J Tischfield; Stewart A Anderson
Journal:  J Vis Exp       Date:  2017-12-03       Impact factor: 1.355

3.  Zebrafish transposable elements show extensive diversification in age, genomic distribution, and developmental expression.

Authors:  Ni-Chen Chang; Quirze Rovira; Jonathan Wells; Cédric Feschotte; Juan M Vaquerizas
Journal:  Genome Res       Date:  2022-01-05       Impact factor: 9.438

4.  Active endogenous retroviral elements in human pluripotent stem cells play a role in regulating host gene expression.

Authors:  Tianzhe Zhang; Ran Zheng; Mao Li; Chenchao Yan; Xianchun Lan; Bei Tong; Pei Lu; Wei Jiang
Journal:  Nucleic Acids Res       Date:  2022-05-20       Impact factor: 19.160

Review 5.  The essential but enigmatic regulatory role of HERVH in pluripotency.

Authors:  Corinne E Sexton; Richard L Tillett; Mira V Han
Journal:  Trends Genet       Date:  2021-07-30       Impact factor: 11.639

6.  EnHERV: Enrichment analysis of specific human endogenous retrovirus patterns and their neighboring genes.

Authors:  Pumipat Tongyoo; Yingyos Avihingsanon; Santhitham Prom-On; Apiwat Mutirangura; Wuttichai Mhuantong; Nattiya Hirankarn
Journal:  PLoS One       Date:  2017-05-04       Impact factor: 3.240

7.  Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing.

Authors:  Xiaoping Han; Haide Chen; Daosheng Huang; Huidong Chen; Lijiang Fei; Chen Cheng; He Huang; Guo-Cheng Yuan; Guoji Guo
Journal:  Genome Biol       Date:  2018-04-05       Impact factor: 13.583

8.  Transcriptome variations among human embryonic stem cell lines are associated with their differentiation propensity.

Authors:  Changbin Sun; Jiawen Zhang; Dongmin Zheng; Jian Wang; Huanming Yang; Xi Zhang
Journal:  PLoS One       Date:  2018-02-14       Impact factor: 3.240

9.  Generation of an immortalized mesenchymal stem cell line producing a secreted biosensor protein for glucose monitoring.

Authors:  Evangelia K Siska; Itamar Weisman; Jacob Romano; Zoltán Ivics; Zsuzsanna Izsvák; Uriel Barkai; Spyros Petrakis; George Koliakos
Journal:  PLoS One       Date:  2017-09-26       Impact factor: 3.240

10.  Epigenetic reprogramming by naïve conditions establishes an irreversible state of partial X chromosome reactivation in female stem cells.

Authors:  Alexandra V Panova; Alexandra N Bogomazova; Maria A Lagarkova; Sergey L Kiselev
Journal:  Oncotarget       Date:  2018-05-18
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