Literature DB >> 26795059

Comparative genome analyses of novel Mangrovimonas-like strains isolated from estuarine mangrove sediments reveal xylan and arabinan utilization genes.

Balachandra Dinesh1, Nyok-Sean Lau1, Go Furusawa1, Seok-Won Kim2, Todd D Taylor2, Swee Yeok Foong3, Alexander Chong Shu-Chien4.   

Abstract

To date, the genus Mangrovimonas consists of only one species, Mangrovimonas yunxiaonensis strain LY01 that is known to have algicidal effects against harmful algal blooms (HABs) of Alexandrium tamarense. In this study, the whole genome sequence of three Mangrovimonas-like strains, TPBH4(T)(=LMG 28913(T),=JCM 30882(T)), ST2L12(T)(=LMG 28914(T),=JCM 30880(T)) and ST2L15(T)(=LMG 28915(T),=JCM 30881(T)) isolated from estuarine mangrove sediments in Perak, Malaysia were described. The sequenced genomes had a range of assembly size ranging from 3.56 Mb to 4.15 Mb which are significantly larger than that of M. yunxiaonensis LY01 (2.67 Mb). Xylan, xylose, L-arabinan and L-arabinose utilization genes were found in the genome sequences of the three Mangrovimonas-like strains described in this study. In contrast, these carbohydrate metabolism genes were not found in the genome sequence of LY01. In addition, TPBH4(T) and ST2L12(T) show capability to degrade xylan using qualitative plate assay method.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Arabinan; Comparative genomics; Genome sequencing; Mangrove; Mangrovimonas; Xylan

Mesh:

Substances:

Year:  2016        PMID: 26795059     DOI: 10.1016/j.margen.2015.12.006

Source DB:  PubMed          Journal:  Mar Genomics        ISSN: 1874-7787            Impact factor:   1.710


  6 in total

1.  Complete genome sequence of Microbulbifer sp. CCB-MM1, a halophile isolated from Matang Mangrove Forest, Malaysia.

Authors:  Tsu Horng Moh; Nyok-Sean Lau; Go Furusawa; Al-Ashraf Abdullah Amirul
Journal:  Stand Genomic Sci       Date:  2017-07-06

2.  Genome features of moderately halophilic polyhydroxyalkanoate-producing Yangia sp. CCB-MM3.

Authors:  Nyok-Sean Lau; Ka-Kei Sam; Abdullah Al-Ashraf Amirul
Journal:  Stand Genomic Sci       Date:  2017-01-23

3.  A Novel Multifunctional β-N-Acetylhexosaminidase Revealed through Metagenomics of an Oil-Spilled Mangrove.

Authors:  Fábio Lino Soares; Joelma Marcon; Michele de Cássia Pereira E Silva; Nittaya Khakhum; Louise Teixeira Cerdeira; Júlia Ronzella Ottoni; Daniela Ferreira Domingos; Rodrigo Gouvea Taketani; Valéria Maia de Oliveira; André Oliveira de Souza Lima; João Lucio Azevedo; Jorge Luiz Mazza Rodrigues; Fernando Dini Andreote
Journal:  Bioengineering (Basel)       Date:  2017-07-09

4.  Genome sequence data of Mangrovimonas sp. strain CR14 isolated from mangrove forest at Tanjung Piai National Park, Malaysia.

Authors:  Muhammad Ramziuddin Zakaria; Ming Quan Lam; Sye Jinn Chen; Mohamad Hamizan Abdul Karim; Lili Tokiman; Adibah Yahya; Mohd Shahir Shamsir; Chun Shiong Chong
Journal:  Data Brief       Date:  2020-05-07

5.  Comparative Genomic Analyses of the Genus Photobacterium Illuminate Biosynthetic Gene Clusters Associated with Antagonism.

Authors:  Nyok-Sean Lau; Wooi Liang Heng; Noorizan Miswan; Nor Azura Azami; Go Furusawa
Journal:  Int J Mol Sci       Date:  2022-08-26       Impact factor: 6.208

6.  Draft Genome Sequence of Halophilic Hahella sp. Strain CCB-MM4, Isolated from Matang Mangrove Forest in Perak, Malaysia.

Authors:  Ka-Kei Sam; Nyok-Sean Lau; Go Furusawa; Al-Ashraf Abdullah Amirul
Journal:  Genome Announc       Date:  2017-10-19
  6 in total

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