| Literature DB >> 26787868 |
Patrick Shaffer1, Omar Valsson2, Michele Parrinello3.
Abstract
The capabilities of molecular simulations have been greatly extended by a number of widely used enhanced sampling methods that facilitate escaping from metastable states and crossing large barriers. Despite these developments there are still many problems which remain out of reach for these methods which has led to a vigorous effort in this area. One of the most important problems that remains unsolved is sampling high-dimensional free-energy landscapes and systems that are not easily described by a small number of collective variables. In this work we demonstrate a new way to compute free-energy landscapes of high dimensionality based on the previously introduced variationally enhanced sampling, and we apply it to the miniprotein chignolin.Entities:
Keywords: biomolecular simulation; enhanced sampling; free-energy calculation; protein folding
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Year: 2016 PMID: 26787868 PMCID: PMC4747745 DOI: 10.1073/pnas.1519712113
Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN: 0027-8424 Impact factor: 11.205