| Literature DB >> 26785742 |
Sebastian Costa1, Sacha Schutz2, Divi Cornec3, Arnaud Uguen4, Isabelle Quintin-Roué5, Agnès Lesourd6, Jean-Marie Berthelot7, Eric Hachulla8, Pierre-Yves Hatron9, Vincent Goeb10, Olivier Vittecoq11, Jacques Olivier Pers12, Pascale Marcorelles13, Alain Saraux14, Valérie Devauchelle-Pensec15.
Abstract
BACKGROUND: Evaluating lymphocytic infiltration of minor salivary gland biopsy in primary Sjögren's syndrome is challenging. We developed and evaluated a digital method for quantifying B and T lymphocytes in whole minor salivary gland biopsy slides.Entities:
Mesh:
Year: 2016 PMID: 26785742 PMCID: PMC4719698 DOI: 10.1186/s13075-016-0924-2
Source DB: PubMed Journal: Arthritis Res Ther ISSN: 1478-6354 Impact factor: 5.156
Fig. 1The digital pixel counting procedure. a A minor salivary gland biopsy section on a standard glass slide was scanned using the NanoZoomer HT Scan system. b The NDPI file thus obtained was divided into several JPEG format files, which restored the original image if reassembled. The JPEG format files were managed by the algorythm (source code, available on https://github.com/dridk/bgsa-ndpi). c The signal in a given pixel was partitioned using a linear unmixing algorithm with simple red/green/blue imagery
Fig. 2Micrographs of four JPEG format images showing the manual-count mask used by the ImageJ Cell counter. Stained B cells (in red) are marked with a dark blue dot and stained T cells (in brown) with a light blue dot. a First JPEG format image. Manual B-/T-cell counts: 135/361 (investigator 1) and 159/406 (investigator 2). Digital B-/T-cell count: 120/423. b Second JPEG format image. Manual B-/T-cell counts: 689/1067 (investigator 1) and 751/1089 (investigator 2). Digital B-/T-cell count: 532/1014. c Third JPEG-format image. Manual B-/T-cell count: 41/356 (investigator 1) and 50/426 (investigator 2). Digital B-/T-cell count: 36/410. d Fourth JPEG format image. Manual B-/T-cell counts: 469/860 (investigator 1) and 448/841 (investigator 2). Digital B-/T-cell count: 599/820
Validation and calibration of the digital procedure; 31 JPEG format files were chosen to represent several inflammatory infiltrate densities
| JPEG format image | B cells (AU) | B cells (SC) | Red pixels | T cells (AU) | T cells (SC) | Brown pixels |
|---|---|---|---|---|---|---|
| ST5/1/gland_26_5.jpg | 10 | 10 | 2656 | 98 | 88 | 6863 |
| ST5/1/gland_26_8.jpg | 25 | 24 | 1778 | 112 | 114 | 5755 |
| ST5/1/gland_26_10.jpg | 161 | 154 | 30,292 | 209 | 183 | 9368 |
| ST5/1/gland_26_13.jpg | 50 | 53 | 10,363 | 201 | 184 | 8956 |
| ST5/1/gland_26_18.jpg | 116 | 102 | 19,832 | 325 | 293 | 22,583 |
| ST5/1/gland_26_21.jpg | 166 | 162 | 27,671 | 278 | 240 | 12,576 |
| ST5/1/gland_49_18.jpg | 151 | 137 | 27,109 | 512 | 485 | 25,954 |
| ST5/1/gland_71_30.jpg | 109 | 129 | 24,932 | 384 | 383 | 27,830 |
| ST5/1/gland_71_47.jpg | 135 | 159 | 34,795 | 361 | 406 | 42,367 |
| ST5/1/gland_71_48.jpg | 132 | 114 | 24,067 | 303 | 269 | 19,527 |
| ST5/1/gland_71_54.jpg | 110 | 115 | 38,737 | 165 | 145 | 23,610 |
| ST5/1/gland_71_62.jpg | 241 | 216 | 95,764 | 150 | 126 | 15,149 |
| ST5/1/gland_71_65.jpg | 288 | 284 | 108,027 | 260 | 242 | 33,111 |
| ST5/1/gland_71_83.jpg | 181 | 167 | 51,012 | 211 | 179 | 30,594 |
| ST5/1/gland_86_0.jpg | 235 | 211 | 106,218 | 401 | 408 | 52,289 |
| ST5/1/gland_86_2.jpg | 121 | 118 | 40,319 | 522 | 516 | 88,540 |
| ST5/1/gland_86_3.jpg | 469 | 448 | 171,921 | 860 | 841 | 81,997 |
| ST5/1/gland_87_16.jpg | 689 | 751 | 153,788 | 1067 | 1089 | 101,444 |
| ST5/1/gland_87_24.jpg | 41 | 50 | 10,413 | 356 | 426 | 41,090 |
| ST5/1/gland_87_28.jpg | 157 | 147 | 54,422 | 613 | 547 | 63,898 |
| ST5/1/gland_87_29.jpg | 57 | 77 | 19,191 | 274 | 297 | 29,548 |
| ST5/1/gland_89_0.jpg | 117 | 135 | 37,489 | 130 | 103 | 17,342 |
| ST5/1/gland_89_1.jpg | 0 | 0 | 89 | 29 | 29 | 3567 |
| ST5/1/gland_89_2.jpg | 153 | 154 | 39,934 | 198 | 170 | 22,261 |
| ST5/1/gland_89_3.jpg | 2 | 2 | 324 | 10 | 9 | 1115 |
| ST5/1/gland_89_4.jpg | 0 | 0 | 6 | 12 | 15 | 1075 |
| ST5/1/gland_89_5.jpg | 24 | 21 | 3310 | 135 | 113 | 15,717 |
| ST5/1/gland_89_6.jpg | 1 | 1 | 131 | 19 | 17 | 2194 |
| ST5/1/gland_89_7.jpg | 1 | 1 | 88 | 30 | 31 | 4321 |
| ST5/1/gland_89_8.jpg | 1 | 2 | 113 | 64 | 69 | 6119 |
| ST5/1/gland_89_9.jpg | 11 | 9 | 909 | 273 | 297 | 26,749 |
| Mean | 128 | 128 | 36,635 | 276 | 268 | 27,210 |
| Median | 116 | 115 | 24,932 | 211 | 184 | 22,261 |
| Q1–Q3 | 18–159 | 16–156 | 2217–40,126.5 | 121–358.5 | 108–394.5 | 7910–31,852.5 |
The ImageJ Cell counter plugin was used to count B and T cells in each file. For each of the 31 images, the process was performed independently by two pathologists (AU and SC). The third and the last columns indicate the number of pixels calculated with the digital procedure for B and T cells. Q
Fig. 3Comparison of manual and digital counts. a Relations between the numbers of red and brown pixels and the manual counts of B and T cells, respectively. b Bland-Altman plots of digital versus manual counts for 31 JPEG format images. There is no tendency to under- or overestimate counts lower than 200 cells. With counts greater than 200 cells, our in-house software slightly overestimated the manual counts. SD Standard deviation
Fig. 4Association between proportion of B cells and infiltrate severity. The proportion of B cells (computed as B-cell count/(B-cell + T-cell count)) was related to four markers of infiltrate severity: Chisholm-Mason grade (a), focus score (b), presence of germinal centres (c), and Tarpley’s class (d). The proportion of B cells varied significantly with the values of these severity markers (p < 0.0001)
Fig. 5Correlations linking proportion of B cells to clinical and laboratory markers for disease activity. The proportion of B cells within minor salivary glands correlated with the intensity of oral dryness (visual analogue scale (VAS) score) (a), systemic activity (Eular Sjögren’s Syndrome Disease Activity Index; ESSDAI) (b), and biological markers for B-cell activity (serum IgG, anti-SSA antibody, and free light chains levels) (d, e, f), but not with unstimulated whole salivary flow (UWSF) (c)