Literature DB >> 26783260

Crystal Structure of Manganese Lipoxygenase of the Rice Blast Fungus Magnaporthe oryzae.

Anneli Wennman1, Ernst H Oliw2, Saeid Karkehabadi1, Yang Chen1.   

Abstract

Lipoxygenases (LOX) are non-heme metal enzymes, which oxidize polyunsaturated fatty acids to hydroperoxides. All LOX belong to the same gene family, and they are widely distributed. LOX of animals, plants, and prokaryotes contain iron as the catalytic metal, whereas fungi express LOX with iron or with manganese. Little is known about metal selection by LOX and the adjustment of the redox potentials of their protein-bound catalytic metals. Thirteen three-dimensional structures of animal, plant, and prokaryotic FeLOX are available, but none of MnLOX. The MnLOX of the most important plant pathogen, the rice blast fungusMagnaporthe oryzae(Mo), was expressed inPichia pastoris.Mo-MnLOX was deglycosylated, purified to homogeneity, and subjected to crystal screening and x-ray diffraction. The structure was solved by sulfur and manganese single wavelength anomalous dispersion to a resolution of 2.0 Å. The manganese coordinating sphere is similar to iron ligands of coral 8R-LOX and soybean LOX-1 but is not overlapping. The Asn-473 is positioned on a short loop (Asn-Gln-Gly-Glu-Pro) instead of an α-helix and forms hydrogen bonds with Gln-281. Comparison with FeLOX suggests that Phe-332 and Phe-525 might contribute to the unique suprafacial hydrogen abstraction and oxygenation mechanism of Mo-MnLOX by controlling oxygen access to the pentadiene radical. Modeling suggests that Arg-525 is positioned close to Arg-182 of 8R-LOX, and both residues likely tether the carboxylate group of the substrate. An oxygen channel could not be identified. We conclude that Mo-MnLOX illustrates a partly unique variation of the structural theme of FeLOX.
© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  crystal structure; enzyme mechanism; fatty acid oxidation; lipoxygenase pathway; metalloenzyme

Mesh:

Substances:

Year:  2016        PMID: 26783260      PMCID: PMC4825015          DOI: 10.1074/jbc.M115.707380

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  44 in total

1.  XDS.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

2.  Building phylogenetic trees from molecular data with MEGA.

Authors:  Barry G Hall
Journal:  Mol Biol Evol       Date:  2013-03-13       Impact factor: 16.240

3.  Experimental phasing with SHELXC/D/E: combining chain tracing with density modification.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

4.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

5.  Structure and interaction with phospholipids of a prokaryotic lipoxygenase from Pseudomonas aeruginosa.

Authors:  Albert Garreta; Silvana P Val-Moraes; Queralt García-Fernández; Montserrat Busquets; Carlos Juan; Antonio Oliver; Antonio Ortiz; Betty J Gaffney; Ignacio Fita; Àngels Manresa; Xavi Carpena
Journal:  FASEB J       Date:  2013-08-28       Impact factor: 5.191

6.  The structure of human 15-lipoxygenase-2 with a substrate mimic.

Authors:  Matthew J Kobe; David B Neau; Caitlin E Mitchell; Sue G Bartlett; Marcia E Newcomer
Journal:  J Biol Chem       Date:  2014-02-04       Impact factor: 5.157

7.  An iron 13S-lipoxygenase with an α-linolenic acid specific hydroperoxidase activity from Fusarium oxysporum.

Authors:  Florian Brodhun; Alvaro Cristobal-Sarramian; Sebastian Zabel; Julia Newie; Mats Hamberg; Ivo Feussner
Journal:  PLoS One       Date:  2013-05-31       Impact factor: 3.240

8.  How good are my data and what is the resolution?

Authors:  Philip R Evans; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-13

9.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

10.  Clustering procedures for the optimal selection of data sets from multiple crystals in macromolecular crystallography.

Authors:  James Foadi; Pierre Aller; Yilmaz Alguel; Alex Cameron; Danny Axford; Robin L Owen; Wes Armour; David G Waterman; So Iwata; Gwyndaf Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-07-20
View more
  15 in total

1.  Structural, Spectroscopic, Electrochemical, and Magnetic Properties for Manganese(II) Triazamacrocyclic Complexes.

Authors:  Atanu Banerjee; Azam S Tolla; Slavica Stjepanovic; Michael D Sevilla; Justin L Goodsell; Alexander Angerhofer; William W Brennessel; Reza Loloee; Ferman A Chavez
Journal:  Inorganica Chim Acta       Date:  2018-11-13       Impact factor: 2.545

2.  The Soybean Lipoxygenase-Substrate Complex: Correlation between the Properties of Tunneling-Ready States and ENDOR-Detected Structures of Ground States.

Authors:  Adam R Offenbacher; Ajay Sharma; Peter E Doan; Judith P Klinman; Brian M Hoffman
Journal:  Biochemistry       Date:  2020-02-05       Impact factor: 3.162

3.  Fast Hydrogen Atom Abstraction by a Hydroxo Iron(III) Porphyrazine.

Authors:  Hongxin Gao; John T Groves
Journal:  J Am Chem Soc       Date:  2017-03-08       Impact factor: 15.419

4.  Two isoforms of lipoxygenase from mature grains of pearl millet [Pennisetum glaucum (L.) R. Br.]: purification and physico-chemico-kinetic characterization.

Authors:  Bunty Sharma; Laxman Kumar Chugh
Journal:  J Food Sci Technol       Date:  2017-03-27       Impact factor: 2.701

5.  An ensemble of lipoxygenase structures reveals novel conformations of the Fe coordination sphere.

Authors:  Svetlana Pakhomova; William E Boeglin; David B Neau; Sue G Bartlett; Alan R Brash; Marcia E Newcomer
Journal:  Protein Sci       Date:  2019-04-03       Impact factor: 6.725

6.  Stabilization and improved activity of arachidonate 11S-lipoxygenase from proteobacterium Myxococcus xanthus.

Authors:  Jung-Ung An; Deok-Kun Oh
Journal:  J Lipid Res       Date:  2018-09-26       Impact factor: 5.922

7.  Mn K-edge X-ray absorption studies of mononuclear Mn(III)-hydroxo complexes.

Authors:  Derek B Rice; Gayan B Wijeratne; Timothy A Jackson
Journal:  J Biol Inorg Chem       Date:  2017-10-20       Impact factor: 3.358

8.  Hydrogen-deuterium exchange reveals long-range dynamical allostery in soybean lipoxygenase.

Authors:  Adam R Offenbacher; Anthony T Iavarone; Judith P Klinman
Journal:  J Biol Chem       Date:  2017-11-30       Impact factor: 5.157

9.  Crystal structure of linoleate 13R-manganese lipoxygenase in complex with an adhesion protein.

Authors:  Yang Chen; Anneli Wennman; Saeid Karkehabadi; Åke Engström; Ernst H Oliw
Journal:  J Lipid Res       Date:  2016-06-15       Impact factor: 5.922

10.  Lipoxygenase 2 from Cyanothece sp. controls dioxygen insertion by steric shielding and substrate fixation.

Authors:  Julia Newie; Piotr Neumann; Martin Werner; Ricardo A Mata; Ralf Ficner; Ivo Feussner
Journal:  Sci Rep       Date:  2017-05-18       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.