| Literature DB >> 26773571 |
Adam Stenman1,2, Jenny Welander3, Ida Gustavsson3, Laurent Brunaud4, Martin Bäckdahl5, Peter Söderkvist3, Oliver Gimm3,6, C Christofer Juhlin1,2, Catharina Larsson1,2.
Abstract
Pheochromocytomas (PCC) and abdominal paragangliomas (PGL) display a highly diverse genetic background and recent gene expression profiling studies have shown that PCC and PGL (together PPGL) alter either kinase signaling pathways or the pseudo-hypoxia response pathway dependent of the genetic composition. Recurrent mutations in the Harvey rat sarcoma viral oncogene homolog (HRAS) have recently been verified in sporadic PPGLs. In order to further establish the HRAS mutation frequency and to characterize the associated expression profiles of HRAS mutated tumors, 156 PPGLs for exon 2 and 3 hotspot mutations in the HRAS gene was screened, and compared with microarray-based gene expression profiles for 93 of the cases. The activating HRAS mutations G13R, Q61R, and Q61K were found in 10/142 PCC (7.0%) and a Q61L mutation was revealed in 1/14 PGL (7.1%). All HRAS mutated cases included in the mRNA expression profiling grouped in Cluster 2, and 21 transcripts were identified as altered when comparing the mutated tumors with 91 HRAS wild-type PPGL. Somatic HRAS mutations were not revealed in cases with known PPGL susceptibility gene mutations and all HRAS mutated cases were benign. The HRAS mutation prevalence of all PPGL published up to date is 5.2% (49/950), and 8.8% (48/548) among cases without a known PPGL susceptibility gene mutation. The findings support a role of HRAS mutations as a somatic driver event in benign PPGL without other known susceptibility gene mutations. HRAS mutated PPGL cluster together with NF1- and RET-mutated tumors associated with activation of kinase-signaling pathways.Entities:
Mesh:
Year: 2016 PMID: 26773571 PMCID: PMC4794776 DOI: 10.1002/gcc.22347
Source DB: PubMed Journal: Genes Chromosomes Cancer ISSN: 1045-2257 Impact factor: 5.006
HRAS Gene Mutations and Clinical Characteristics of the PPGL Included in the Study
| Series | Series | Series | Series | Series | |
|---|---|---|---|---|---|
| Parameter | A | B | C | D | A, B, C, and D |
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| Male:Female | 32:43 | 26:34 | 5:7 | 3:6 | 66:90 |
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| Mean years | 55 | 53 | 63 | 58 | 55 |
| Median (range) years | 57 (14–83) | 52 (23–84) | 66 (39–76) | 58 (42–80) | 57 (14–84) |
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| Total | 75 | 60 | 12 | 9 | 156 |
| PCC | 64 | 57 | 12 | 9 | 142 |
| PGL | 11 | 3 | 0 | 0 | 14 |
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| Mean mm | 52 | 41 | 34 | 47 | 46 |
| Median (range) mm | 45 (20–160) | 40 (10–100) | 30 (17–60) | 50 (10–90) | 40 (10–160) |
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| Benign | 69 | 59 | 12 | 9 | 149 |
| Malignant | 6 | 1 | 0 | 0 | 7 |
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| Mutated | 37 | 9 | 3 | 6 | 55 |
| Unknown mutation (sporadic) | 38 | 51 | 9 | 3 | 101 |
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| Wild‐type | 70 | 57 | 10 | 8 | 145 |
| Mutated | 5 | 3 | 2 | 1 | 11 |
| G13R | 0 | 0 | 1 | 0 | 1 |
| Q61R | 3 | 1 | 1 | 1 | 6 |
| Q61K | 2 | 1 | 0 | 0 | 3 |
| Q61L | 0 | 1 (PGL) | 0 | 0 | 1 |
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| Total | 6.7% | 5.0% | 16.7% | 11.1% | 11/156 (7.1%) |
| PCC | 7.8% | 1.5% | 16.7% | 11.1% | 10/142 (7.0%) |
| PGL | 0% | 33.3% | 0% | 0% | 1/14 (7.1%) |
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| Male | 6.3% | 7.7% | 0% | 0% | 4/66 (6.1%) |
| Female | 7.0% | 2.9% | 28.6% | 16.7% | 7/90 (7.8%) |
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| benign | 7.2% | 5.1% | 16.7% | 11.1% | 11/149 (7.4%) |
| Malignant | 0% | 0% | 0% | 0% | 0/7 (0%) |
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| Unknown mutation (sporadic) | 13.2% | 5.9% | 22.2% | 33.3% | 11/101 (10.9%) |
| Mutated | 0% | 0% | 0% | 0% | 0/55 (0%) |
Tumor size refer to the maximum diameter.
Series A = Karolinska University Hospital, Sweden.
Series B = University de Lorraine, Vandoeuvre‐les‐Nancy, France.
Series C = Linköping University Hospital, Linköping, Sweden.
Series D = Haukeland University Hospital, Bergen, Norway.
Figure 1Detection of a HRAS Q61L mutation, hierarchical clustering of PPGLs and PNMT gene expression in relation to HRAS mutation status. (A) Chromatogram of case 227 (PGL) showing the Q61L mutation (c.182A>T, COSM498), which has previously not been reported in PPGL. A vertical arrow shows the heterozygous missense variant. (B) Hierarchical clustering of 93 tumors (indicated by their case numbers) and 5 control cases (indicated as MEN2, NF1, SDHA, and VHL) based on their expression levels for 454 genes according to Burnichon et al. 2011. The dendrogram shows separation of tumors into two distinct groups (Cluster 1 to the left and Cluster 2 to the right). The PPGL mutation status is indicated below. All 7 HRAS‐mutated cases clustered together with the tumors endowed with mutations in the NF1‐ and RET genes. (C) RNA levels of the PNMT gene compared between the PPGL with (HRAS mutated n = 7) and without (HRAS wild‐type n = 86) HRAS mutations. Horizontal bars represent mean values and the gene expression has been normalized to the mean value of cases endowed with constitutional NF1‐ and RET mutations. [Color figure can be viewed in the online issue, which is available at wileyonlinelibrary.com.]
Summary of HRAS Mutation Studies in PPGL
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| PPGL susceptibility gene | |||||||
|---|---|---|---|---|---|---|---|---|
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| Codon 13 G13R | Codon 61 Q61R | Codon 61 Q61K | Codon 61 Q61L | Wild‐type codon 13/61 | Known mutation | Unknown mutation (sporadic) | |
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| PCC ( | 9 | 1 | 5 | 3 | 0 | 132 | 48 | 93 |
| PGL ( | 1 | 0 | 0 | 0 | 1 | 13 | 7 | 7 |
| Total ( | 10 | 1 | 5 | 3 | 1 | 145 | 55 | 100 |
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| PCC ( | 0 | 0 | 0 | 0 | 0 | 10 | 0 | 10 |
| Total ( | 0 | 0 | 0 | 0 | 0 | 10 | 0 | 10 |
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| PCC ( | 1 | 1 | 0 | 0 | 0 | 18 | 0 | 19 |
| Total ( | 1 | 1 | 0 | 0 | 0 | 18 | 0 | 19 |
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| PCC ( | 3 | 1 | 1 | 1 | 0 | 69 | 22 | 50 |
| PGL ( | 1 | 0 | 1 | 0 | 0 | 8 | 3 | 6 |
| Total ( | 4 | 1 | 2 | 1 | 0 | 77 | 25 | 56 |
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| PCC ( | 14 | 1 | 12 | 1 | 0 | 202 | 76 | 140 |
| PGL ( | 0 | 0 | 0 | 0 | 0 | 55 | 31 | 24 |
| Total ( | 14 | 1 | 12 | 1 | 0 | 257 | 107 | 164 |
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| PCC ( | 6 | 1 | 5 | 0 | 0 | 54 | 16 | 44 |
| PGL ( | 0 | 0 | 0 | 0 | 0 | 5 | 0 | 5 |
| Total ( | 6 | 1 | 5 | 0 | 0 | 59 | 16 | 49 |
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| PCC ( | 10 | 1 | 4 | 2 | 0 | 158 | 100 | 68 |
| PGL ( | 0 | 0 | 0 | 0 | 0 | 25 | 16 | 9 |
| Total ( | 10 | 1 | 4 | 2 | 0 | 183 | 116 | 77 |
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| PCC ( | 3 | 0 | 3 | 0 | 0 | 125 | 68 | 60 |
| PGL ( | 1 | 0 | 0 | 1 | 0 | 27 | 15 | 13 |
| Total ( | 4 | 0 | 3 | 1 | 0 | 152 | 83 | 73 |
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| 6 (0.7%) | 30 (3.7%) | 7 (0.9%) | 0 | 768 (94.3%) | 1/330 (0.3%) | 45/484 (9.3%) |
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| 0 | 1 (0.7%) | 1 (0.7%) | 1 (0.7%) | 133 (97.8%) | 0/72 | 3/64 (4.7%) |
| Total ( |
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One PCC with a Q61R HRAS mutation has been previously published (Juhlin et al., 2015) and is excluded.
One head and neck paraganglioma is excluded.
Twenty head and neck paragangliomas are excluded.
Six metastases and 3 thoracic paragangliomas are excluded. Three HRAS mutations from this study are not reported in the table: G12R (n = 1), S145L (n = 1), and A146T (n = 1).
Genes with Altered Expression in HRAS Mutated Tumors (n = 7) Compared with HRAS Wild‐Type Cases (n = 91) using a Benjamini–Hochberg Corrected FDR of 10 %
| Transcript cluster id | Corrected | Fold change | Fold change log | Gene symbol |
|---|---|---|---|---|
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| 8135774 | 0.0632 | 2.7526 | 1.4608 |
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| 8138337 | 0.0000 | 2.3660 | 1.2424 |
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| 7928907 | 0.0253 | 2.0682 | 1.0484 | |
| 8000963 | 0.0025 | 1.9834 | 0.9880 |
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| 7921852 | 0.0532 | 1.7622 | 0.8174 |
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| 8107518 | 0.0532 | 1.6164 | 0.6928 | |
| 8103374 | 0.0889 | 1.5410 | 0.6239 | |
| 8152863 | 0.0253 | 1.5150 | 0.5993 | |
| 8156110 | 0.0253 | 1.5148 | 0.5991 | |
| 8000757 | 0.0005 | 1.4531 | 0.5391 |
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| 8157027 | 0.0253 | 1.4506 | 0.5367 |
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| 7998053 | 0.0854 | 1.3622 | 0.4459 | |
| 7948037 | 0.0253 | 1.3206 | 0.4012 | |
| 7965838 | 0.0300 | 1.1981 | 0.2608 | |
| 8040672 | 0.0832 | 1.1767 | 0.2347 |
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| 8036483 | 0.0909 | −1.3839 | −0.4687 |
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| 8098705 | 0.0604 | −1.3403 | −0.4225 |
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| 8061542 | 0.0832 | −1.3147 | −0.3948 |
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| 7989619 | 0.0419 | −1.3038 | −0.3827 |
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| 7983290 | 0.0253 | −1.3018 | −0.3805 |
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| 7924230 | 0.0832 | −1.2333 | −0.3025 |
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