Literature DB >> 26768532

Structures of Iridoid Synthase from Cantharanthus roseus with Bound NAD(+) , NADPH, or NAD(+) /10-Oxogeranial: Reaction Mechanisms.

Yumei Hu1, Weidong Liu1, Satish R Malwal2, Yingying Zheng1, Xinxin Feng2, Tzu-Ping Ko3, Chun-Chi Chen1, Zhongxia Xu1, Meixia Liu1, Xu Han1, Jian Gao1, Eric Oldfield2, Rey-Ting Guo1.   

Abstract

Structures of the iridoid synthase nepetalactol synthase in the presence of NAD(+) , NADPH or NAD(+) /10-oxogeranial were solved. The 10-oxogeranial substrate binds in a transoid-O1-C3 conformation and can be reduced by hydride addition to form the byproduct S-10-oxo-citronellal. Tyr178 Oζ is positioned 2.5 Å from the substrate O1 and provides the second proton required for reaction. Nepetalactol product formation requires rotation about C1-C2 to form the cisoid isomer, leading to formation of the cis-enolate, together with rotation about C4-C5, which enables cyclization and lactol production. The structure is similar to that of progesterone-5β-reductase, with almost identical positioning of NADP, Lys146(147), Tyr178(179), and F342(343), but only Tyr178 and Phe342 appear to be essential for activity. The transoid 10-oxogeranial structure also serves as a model for β-face hydride attack in progesterone 5β-reductases and is of general interest in the context of asymmetric synthesis.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  X-ray crystallography; biosynthesis; enzyme mechanisms; monoterpenes; natural products

Mesh:

Substances:

Year:  2015        PMID: 26768532      PMCID: PMC4718417          DOI: 10.1002/anie.201508310

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  9 in total

Review 1.  Scoring residue conservation.

Authors:  William S J Valdar
Journal:  Proteins       Date:  2002-08-01

2.  Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions.

Authors:  E Krissinel; K Henrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

Review 3.  Terpene biosynthesis: modularity rules.

Authors:  Eric Oldfield; Fu-Yang Lin
Journal:  Angew Chem Int Ed Engl       Date:  2011-11-21       Impact factor: 15.336

4.  The crystal structure of progesterone 5beta-reductase from Digitalis lanata defines a novel class of short chain dehydrogenases/reductases.

Authors:  Andrea Thorn; Claudia Egerer-Sieber; Christof M Jäger; Vanessa Herl; Frieder Müller-Uri; Wolfgang Kreis; Yves A Muller
Journal:  J Biol Chem       Date:  2007-11-21       Impact factor: 5.157

5.  Progesterone 5β-reductases/iridoid synthases (PRISE): gatekeeper role of highly conserved phenylalanines in substrate preference and trapping is supported by molecular dynamics simulations.

Authors:  Jan Petersen; Harald Lanig; Jennifer Munkert; Peter Bauer; Frieder Müller-Uri; Wolfgang Kreis
Journal:  J Biomol Struct Dyn       Date:  2015-10-12

6.  Iridoid synthase activity is common among the plant progesterone 5β-reductase family.

Authors:  Jennifer Munkert; Jacob Pollier; Karel Miettinen; Alex Van Moerkercke; Richard Payne; Frieder Müller-Uri; Vincent Burlat; Sarah E O'Connor; Johan Memelink; Wolfgang Kreis; Alain Goossens
Journal:  Mol Plant       Date:  2014-12-11       Impact factor: 21.949

7.  The Jpred 3 secondary structure prediction server.

Authors:  Christian Cole; Jonathan D Barber; Geoffrey J Barton
Journal:  Nucleic Acids Res       Date:  2008-05-07       Impact factor: 16.971

8.  Characterization of 10-hydroxygeraniol dehydrogenase from Catharanthus roseus reveals cascaded enzymatic activity in iridoid biosynthesis.

Authors:  Ramakrishnan Krithika; Prabhakar Lal Srivastava; Bajaj Rani; Swati P Kolet; Manojkumar Chopade; Mantri Soniya; Hirekodathakallu V Thulasiram
Journal:  Sci Rep       Date:  2015-02-05       Impact factor: 4.379

9.  Conversion of substrate analogs suggests a Michael cyclization in iridoid biosynthesis.

Authors:  Stephanie Lindner; Fernando Geu-Flores; Stefan Bräse; Nathaniel H Sherden; Sarah E O'Connor
Journal:  Chem Biol       Date:  2014-10-23
  9 in total
  8 in total

1.  Structure and Function of a "Head-to-Middle" Prenyltransferase: Lavandulyl Diphosphate Synthase.

Authors:  Meixia Liu; Chun-Chi Chen; Lu Chen; Xiansha Xiao; Yingying Zheng; Jian-Wen Huang; Weidong Liu; Tzu-Ping Ko; Ya-Shan Cheng; Xinxin Feng; Eric Oldfield; Rey-Ting Guo; Yanhe Ma
Journal:  Angew Chem Int Ed Engl       Date:  2016-02-29       Impact factor: 15.336

Review 2.  Structural and Chemical Biology of Terpenoid Cyclases.

Authors:  David W Christianson
Journal:  Chem Rev       Date:  2017-08-25       Impact factor: 60.622

3.  Evidence for an Enzyme-Catalyzed Rauhut-Currier Reaction during the Biosynthesis of Spinosyn A.

Authors:  Sei-Hyun Choi; Byungsun Jeon; Namho Kim; Hsin-Hui Wu; Tzu-Ping Ko; Mark W Ruszczycky; Eta A Isiorho; Yung-Nan Liu; Adrian T Keatinge-Clay; Ming-Daw Tsai; Hung-Wen Liu
Journal:  J Am Chem Soc       Date:  2021-11-23       Impact factor: 15.419

Review 4.  Terpene synthases in disguise: enzymology, structure, and opportunities of non-canonical terpene synthases.

Authors:  Jeffrey D Rudolf; Chin-Yuan Chang
Journal:  Nat Prod Rep       Date:  2020-03-25       Impact factor: 13.423

5.  Identification and functional characterization of three iridoid synthases in Gardenia jasminoides.

Authors:  Chong Xu; Peng Ye; Qingwen Wu; Shuangcheng Liang; Wuke Wei; Jinfen Yang; Weiwen Chen; Ruoting Zhan; Dongming Ma
Journal:  Planta       Date:  2022-02-03       Impact factor: 4.116

6.  Uncoupled activation and cyclization in catmint reductive terpenoid biosynthesis.

Authors:  Benjamin R Lichman; Mohamed O Kamileen; Gabriel R Titchiner; Gerhard Saalbach; Clare E M Stevenson; David M Lawson; Sarah E O'Connor
Journal:  Nat Chem Biol       Date:  2018-12-10       Impact factor: 16.174

7.  Identification of iridoid synthases from Nepeta species: Iridoid cyclization does not determine nepetalactone stereochemistry.

Authors:  Nathaniel H Sherden; Benjamin Lichman; Lorenzo Caputi; Dongyan Zhao; Mohamed O Kamileen; C Robin Buell; Sarah E O'Connor
Journal:  Phytochemistry       Date:  2017-11-05       Impact factor: 4.004

8.  A multisubstrate reductase from Plantago major: structure-function in the short chain reductase superfamily.

Authors:  Rachel Fellows; Christopher M Russo; Catarina S Silva; Soon Goo Lee; Joseph M Jez; John D Chisholm; Chloe Zubieta; Max H Nanao
Journal:  Sci Rep       Date:  2018-10-04       Impact factor: 4.379

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.