Literature DB >> 26764865

Recognition of the nucleosome by chromatin factors and enzymes.

Robert K McGinty1, Song Tan2.   

Abstract

Dynamic expression of the genome requires coordinated binding of chromatin factors and enzymes that carry out genome-templated processes. Until recently, the molecular mechanisms governing how these factors and enzymes recognize and act on the fundamental unit of chromatin, the nucleosome core particle, have remained a mystery. A small, yet growing set of structures of the nucleosome in complex with chromatin factors and enzymes highlights the importance of multivalency in defining nucleosome binding and specificity. Many such interactions include an arginine anchor motif, which targets a unique acidic patch on the nucleosome surface. These emerging paradigms for chromatin recognition will be discussed, focusing on several recent structural breakthroughs.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 26764865      PMCID: PMC4834262          DOI: 10.1016/j.sbi.2015.11.014

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  57 in total

1.  Chromatin fiber folding: requirement for the histone H4 N-terminal tail.

Authors:  Benedetta Dorigo; Thomas Schalch; Kerstin Bystricky; Timothy J Richmond
Journal:  J Mol Biol       Date:  2003-03-14       Impact factor: 5.469

2.  Single-base resolution mapping of H1-nucleosome interactions and 3D organization of the nucleosome.

Authors:  Sajad Hussain Syed; Damien Goutte-Gattat; Nils Becker; Sam Meyer; Manu Shubhdarshan Shukla; Jeffrey J Hayes; Ralf Everaers; Dimitar Angelov; Jan Bednar; Stefan Dimitrov
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

3.  Retroviral DNA integration: reaction pathway and critical intermediates.

Authors:  Min Li; Michiyo Mizuuchi; Terrence R Burke; Robert Craigie
Journal:  EMBO J       Date:  2006-02-16       Impact factor: 11.598

Review 4.  Transcriptional regulation by Polycomb group proteins.

Authors:  Luciano Di Croce; Kristian Helin
Journal:  Nat Struct Mol Biol       Date:  2013-10       Impact factor: 15.369

5.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

Review 6.  The role of the nucleosome acidic patch in modulating higher order chromatin structure.

Authors:  Anna A Kalashnikova; Mary E Porter-Goff; Uma M Muthurajan; Karolin Luger; Jeffrey C Hansen
Journal:  J R Soc Interface       Date:  2013-02-27       Impact factor: 4.118

7.  The nucleosomal surface as a docking station for Kaposi's sarcoma herpesvirus LANA.

Authors:  Andrew J Barbera; Jayanth V Chodaparambil; Brenna Kelley-Clarke; Vladimir Joukov; Johannes C Walter; Karolin Luger; Kenneth M Kaye
Journal:  Science       Date:  2006-02-10       Impact factor: 47.728

8.  Structure of RCC1 chromatin factor bound to the nucleosome core particle.

Authors:  Ravindra D Makde; Joseph R England; Hemant P Yennawar; Song Tan
Journal:  Nature       Date:  2010-08-25       Impact factor: 49.962

9.  Structural basis for retroviral integration into nucleosomes.

Authors:  Daniel P Maskell; Ludovic Renault; Erik Serrao; Paul Lesbats; Rishi Matadeen; Stephen Hare; Dirk Lindemann; Alan N Engelman; Alessandro Costa; Peter Cherepanov
Journal:  Nature       Date:  2015-06-10       Impact factor: 49.962

10.  The N-terminal acetylation of Sir3 stabilizes its binding to the nucleosome core particle.

Authors:  Nadia Arnaudo; Israel S Fernández; Stephen H McLaughlin; Sew Y Peak-Chew; Daniela Rhodes; Fabrizio Martino
Journal:  Nat Struct Mol Biol       Date:  2013-08-11       Impact factor: 15.369

View more
  55 in total

1.  The ATPase motor of the Chd1 chromatin remodeler stimulates DNA unwrapping from the nucleosome.

Authors:  Joshua M Tokuda; Ren Ren; Robert F Levendosky; Rebecca J Tay; Ming Yan; Lois Pollack; Gregory D Bowman
Journal:  Nucleic Acids Res       Date:  2018-06-01       Impact factor: 16.971

2.  Regulation of the Dot1 histone H3K79 methyltransferase by histone H4K16 acetylation.

Authors:  Marco Igor Valencia-Sánchez; Pablo De Ioannes; Miao Wang; David M Truong; Rachel Lee; Jean-Paul Armache; Jef D Boeke; Karim-Jean Armache
Journal:  Science       Date:  2021-01-22       Impact factor: 47.728

Review 3.  Recognition of ubiquitinated nucleosomes.

Authors:  Michael T Morgan; Cynthia Wolberger
Journal:  Curr Opin Struct Biol       Date:  2016-12-04       Impact factor: 6.809

Review 4.  Reading chromatin signatures after DNA double-strand breaks.

Authors:  Marcus D Wilson; Daniel Durocher
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-10-05       Impact factor: 6.237

5.  The nucleosomal acidic patch relieves auto-inhibition by the ISWI remodeler SNF2h.

Authors:  Nathan Gamarra; Stephanie L Johnson; Michael J Trnka; Alma L Burlingame; Geeta J Narlikar
Journal:  Elife       Date:  2018-04-17       Impact factor: 8.140

6.  Structural Basis of Dot1L Stimulation by Histone H2B Lysine 120 Ubiquitination.

Authors:  Marco Igor Valencia-Sánchez; Pablo De Ioannes; Miao Wang; Nikita Vasilyev; Ruoyu Chen; Evgeny Nudler; Jean-Paul Armache; Karim-Jean Armache
Journal:  Mol Cell       Date:  2019-04-10       Impact factor: 17.970

7.  Structural basis of nucleosome-dependent cGAS inhibition.

Authors:  Joshua A Boyer; Cathy J Spangler; Joshua D Strauss; Andrew P Cesmat; Pengda Liu; Robert K McGinty; Qi Zhang
Journal:  Science       Date:  2020-09-10       Impact factor: 47.728

8.  Structural basis for sequestration and autoinhibition of cGAS by chromatin.

Authors:  Sebastian Michalski; Carina C de Oliveira Mann; Che A Stafford; Gregor Witte; Joseph Bartho; Katja Lammens; Veit Hornung; Karl-Peter Hopfner
Journal:  Nature       Date:  2020-09-10       Impact factor: 49.962

9.  Crystal Structure of the LSD1/CoREST Histone Demethylase Bound to Its Nucleosome Substrate.

Authors:  Sang-Ah Kim; Jiang Zhu; Neela Yennawar; Priit Eek; Song Tan
Journal:  Mol Cell       Date:  2020-05-11       Impact factor: 17.970

10.  Structural Basis of H2B Ubiquitination-Dependent H3K4 Methylation by COMPASS.

Authors:  Peter L Hsu; Hui Shi; Calvin Leonen; Jianming Kang; Champak Chatterjee; Ning Zheng
Journal:  Mol Cell       Date:  2019-11-13       Impact factor: 17.970

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.