Literature DB >> 26759004

A parallelized microfluidic DNA bisulfite conversion module for streamlined methylation analysis.

Alejandro Stark1, Dong Jin Shin2, Thomas Pisanic3, Kuangwen Hsieh1, Tza-Huei Wang4,5,6.   

Abstract

Aberrant methylation of DNA has been identified as an epigenetic biomarker for numerous cancer types. The vast majority of techniques aimed at detecting methylation require bisulfite conversion of the DNA sample prior to analysis, which until now has been a benchtop process. Although microfluidics has potential benefits of simplified operation, sample and reagent economy, and scalability, bisulfite conversion has yet to be implemented in this format. Here, we present a novel droplet microfluidic design that facilitates rapid bisulfite conversion by reducing the necessary processing steps while retaining comparable performance to existing methods. This new format has a reduced overall processing time and is readily scalable for use in high throughput DNA methylation analysis.

Entities:  

Keywords:  Bisulfite conversion; Epigenetics; Lab-on-chip; MSP; Magnetofluidics; Methylation

Mesh:

Substances:

Year:  2016        PMID: 26759004      PMCID: PMC6586411          DOI: 10.1007/s10544-015-0029-8

Source DB:  PubMed          Journal:  Biomed Microdevices        ISSN: 1387-2176            Impact factor:   2.838


  9 in total

1.  Microfluidic Low-Input Fluidized-Bed Enabled ChIP-seq Device for Automated and Parallel Analysis of Histone Modifications.

Authors:  Travis W Murphy; Yuan-Pang Hsieh; Sai Ma; Yan Zhu; Chang Lu
Journal:  Anal Chem       Date:  2018-06-08       Impact factor: 6.986

2.  Microfluidic MeDIP-seq for low-input methylomic analysis of mammary tumorigenesis in mice.

Authors:  Yan Zhu; Zhenning Cao; Chang Lu
Journal:  Analyst       Date:  2019-03-11       Impact factor: 4.616

Review 3.  Microfluidic epigenomic mapping technologies for precision medicine.

Authors:  Chengyu Deng; Lynette B Naler; Chang Lu
Journal:  Lab Chip       Date:  2019-07-24       Impact factor: 6.799

4.  Droplet Magnetofluidic Assay Platform for Quantitative Methylation-Specific PCR.

Authors:  Alejandro Stark; Alexander Trick; Thomas R Pisanic; Tza-Huei Wang
Journal:  Methods Mol Biol       Date:  2022

5.  Proceedings of the 3rd Annual Albert Institute for Bladder Cancer Research Symposium.

Authors:  Thomas W Flaig; Ashish M Kamat; Donna Hansel; Molly A Ingersoll; H Barton Grossman; Cathy Mendelsohn; David DeGraff; Joseph C Liao; John A Taylor
Journal:  Bladder Cancer       Date:  2017-07-27

Review 6.  Microfluidics for genome-wide studies involving next generation sequencing.

Authors:  Sai Ma; Travis W Murphy; Chang Lu
Journal:  Biomicrofluidics       Date:  2017-03-10       Impact factor: 2.800

7.  Sample-to-Answer Droplet Magnetofluidic Platform for Point-of-Care Hepatitis C Viral Load Quantitation.

Authors:  Dong Jin Shin; Alexander Y Trick; Yu-Hsiang Hsieh; David L Thomas; Tza-Huei Wang
Journal:  Sci Rep       Date:  2018-06-28       Impact factor: 4.379

8.  Guidelines for pre-analytical conditions for assessing the methylation of circulating cell-free DNA.

Authors:  Mohammad Amin Kerachian; Marjan Azghandi; Sina Mozaffari-Jovin; Alain R Thierry
Journal:  Clin Epigenetics       Date:  2021-10-18       Impact factor: 6.551

9.  Cell-type-specific brain methylomes profiled via ultralow-input microfluidics.

Authors:  Sai Ma; Mario de la Fuente Revenga; Zhixiong Sun; Chen Sun; Travis W Murphy; Hehuang Xie; Javier González-Maeso; Chang Lu
Journal:  Nat Biomed Eng       Date:  2018-03-07       Impact factor: 25.671

  9 in total

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