Literature DB >> 26747843

Predicting the genetic consequences of future climate change: The power of coupling spatial demography, the coalescent, and historical landscape changes.

Jason L Brown1, Jennifer J Weber2, Diego F Alvarado-Serrano3, Michael J Hickerson4, Steven J Franks2, Ana C Carnaval5.   

Abstract

PREMISE OF THE STUDY: Climate change is a widely accepted threat to biodiversity. Species distribution models (SDMs) are used to forecast whether and how species distributions may track these changes. Yet, SDMs generally fail to account for genetic and demographic processes, limiting population-level inferences. We still do not understand how predicted environmental shifts will impact the spatial distribution of genetic diversity within taxa.
METHODS: We propose a novel method that predicts spatially explicit genetic and demographic landscapes of populations under future climatic conditions. We use carefully parameterized SDMs as estimates of the spatial distribution of suitable habitats and landscape dispersal permeability under present-day, past, and future conditions. We use empirical genetic data and approximate Bayesian computation to estimate unknown demographic parameters. Finally, we employ these parameters to simulate realistic and complex models of responses to future environmental shifts. We contrast parameterized models under current and future landscapes to quantify the expected magnitude of change. KEY
RESULTS: We implement this framework on neutral genetic data available from Penstemon deustus. Our results predict that future climate change will result in geographically widespread declines in genetic diversity in this species. The extent of reduction will heavily depend on the continuity of population networks and deme sizes.
CONCLUSIONS: To our knowledge, this is the first study to provide spatially explicit predictions of within-species genetic diversity using climatic, demographic, and genetic data. Our approach accounts for climatic, geographic, and biological complexity. This framework is promising for understanding evolutionary consequences of climate change, and guiding conservation planning.
© 2016 Botanical Society of America.

Entities:  

Keywords:  Penstemon deustus; Plantaginaceae; climate change; conservation; demographic inference; spatial coalescent; species distribution models

Mesh:

Year:  2016        PMID: 26747843     DOI: 10.3732/ajb.1500117

Source DB:  PubMed          Journal:  Am J Bot        ISSN: 0002-9122            Impact factor:   3.844


  11 in total

1.  Inferring responses to climate dynamics from historical demography in neotropical forest lizards.

Authors:  Ivan Prates; Alexander T Xue; Jason L Brown; Diego F Alvarado-Serrano; Miguel T Rodrigues; Michael J Hickerson; Ana C Carnaval
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-19       Impact factor: 11.205

Review 2.  The evolutionary genomics of species' responses to climate change.

Authors:  Jonás A Aguirre-Liguori; Santiago Ramírez-Barahona; Brandon S Gaut
Journal:  Nat Ecol Evol       Date:  2021-08-09       Impact factor: 15.460

3.  Genomic basis and evolutionary potential for extreme drought adaptation in Arabidopsis thaliana.

Authors:  Moises Exposito-Alonso; François Vasseur; Wei Ding; George Wang; Hernán A Burbano; Detlef Weigel
Journal:  Nat Ecol Evol       Date:  2017-12-18       Impact factor: 15.460

4.  PaleoClim, high spatial resolution paleoclimate surfaces for global land areas.

Authors:  Jason L Brown; Daniel J Hill; Aisling M Dolan; Ana C Carnaval; Alan M Haywood
Journal:  Sci Data       Date:  2018-11-13       Impact factor: 6.444

5.  Using high-throughput sequencing to investigate the factors structuring genomic variation of a Mediterranean grasshopper of great conservation concern.

Authors:  María José González-Serna; Pedro J Cordero; Joaquín Ortego
Journal:  Sci Rep       Date:  2018-09-07       Impact factor: 4.379

6.  SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersal.

Authors:  Mathias Currat; Miguel Arenas; Claudio S Quilodràn; Laurent Excoffier; Nicolas Ray
Journal:  Bioinformatics       Date:  2019-11-01       Impact factor: 6.937

7.  Evolutionary genomics can improve prediction of species' responses to climate change.

Authors:  Ann-Marie Waldvogel; Barbara Feldmeyer; Gregor Rolshausen; Moises Exposito-Alonso; Christian Rellstab; Robert Kofler; Thomas Mock; Karl Schmid; Imke Schmitt; Thomas Bataillon; Outi Savolainen; Alan Bergland; Thomas Flatt; Frederic Guillaume; Markus Pfenninger
Journal:  Evol Lett       Date:  2020-01-14

Review 8.  Process-explicit models reveal the structure and dynamics of biodiversity patterns.

Authors:  Julia A Pilowsky; Robert K Colwell; Carsten Rahbek; Damien A Fordham
Journal:  Sci Adv       Date:  2022-08-05       Impact factor: 14.957

Review 9.  Global genetic diversity status and trends: towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition.

Authors:  Sean Hoban; Frederick I Archer; Laura D Bertola; Jason G Bragg; Martin F Breed; Michael W Bruford; Melinda A Coleman; Robert Ekblom; W Chris Funk; Catherine E Grueber; Brian K Hand; Rodolfo Jaffé; Evelyn Jensen; Jeremy S Johnson; Francine Kershaw; Libby Liggins; Anna J MacDonald; Joachim Mergeay; Joshua M Miller; Frank Muller-Karger; David O'Brien; Ivan Paz-Vinas; Kevin M Potter; Orly Razgour; Cristiano Vernesi; Margaret E Hunter
Journal:  Biol Rev Camb Philos Soc       Date:  2022-04-12

10.  Insights into the neutral and adaptive processes shaping the spatial distribution of genomic variation in the economically important Moroccan locust (Dociostaurus maroccanus).

Authors:  María José González-Serna; Pedro J Cordero; Joaquín Ortego
Journal:  Ecol Evol       Date:  2020-03-31       Impact factor: 2.912

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