Literature DB >> 26746430

Expression Characterization of Stress Genes Under High and Low Temperature Stresses in the Pacific Oyster, Crassostrea gigas.

Qihui Zhu1,2,3, Linlin Zhang1,4,3, Li Li5,6,7, Huayong Que1,4,3, Guofan Zhang8,9,10.   

Abstract

As a characteristic sessile inhabitant of the intertidal zone, the Pacific oyster Crassostrea gigas occupies one of the most physically stressful environments on earth. With high exposure to terrestrial conditions, oysters must tolerate broad fluctuations in temperature range. However, oysters' cellular and molecular responses to temperature stresses have not been fully characterized. Here, we analyzed oyster transcriptome data under high and low temperatures. We also identified over 30 key temperature stress-responsive candidate genes, which encoded stress proteins such as heat shock proteins and apoptosis-associated proteins. The expression characterization of these genes under short-term cold and hot environments (5 and 35 °C) and long-term cold environments (5 °C) was detected by quantitative real-time PCR. Most of these genes reached expression peaks during the recovery stage after 24 h of heat stress, and these genes were greatly induced around day 3 in long-term cold stress while responded little to short-term cold stress. In addition, in the second heat stress after 2 days of recovery, oysters showed milder expression in these genes and a lower mortality rate, which indicated the existence of plasticity in the oyster's response to heat stress. We confirmed that homeostatic flexibility and anti-apoptosis might be crucial centers of temperature stress responses in oysters. Furthermore, we analyzed stress gene families in 11 different species and found that the linage-specific expansion of stress genes might be implicated in adaptive evolution. These results indicated that both plasticity and evolution played an important role in the stress response adaptation of oysters.

Entities:  

Keywords:  Adaptation; Gene expression; Oysters; Stress proteins; Temperature stress

Mesh:

Substances:

Year:  2016        PMID: 26746430     DOI: 10.1007/s10126-015-9678-0

Source DB:  PubMed          Journal:  Mar Biotechnol (NY)        ISSN: 1436-2228            Impact factor:   3.619


  50 in total

1.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

Authors:  K J Livak; T D Schmittgen
Journal:  Methods       Date:  2001-12       Impact factor: 3.608

2.  TimeTree: a public knowledge-base of divergence times among organisms.

Authors:  S Blair Hedges; Joel Dudley; Sudhir Kumar
Journal:  Bioinformatics       Date:  2006-10-04       Impact factor: 6.937

3.  Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3.

Authors:  Mira V Han; Gregg W C Thomas; Jose Lugo-Martinez; Matthew W Hahn
Journal:  Mol Biol Evol       Date:  2013-05-24       Impact factor: 16.240

4.  Mapping and quantifying mammalian transcriptomes by RNA-Seq.

Authors:  Ali Mortazavi; Brian A Williams; Kenneth McCue; Lorian Schaeffer; Barbara Wold
Journal:  Nat Methods       Date:  2008-05-30       Impact factor: 28.547

Review 5.  The heat-shock proteins.

Authors:  S Lindquist; E A Craig
Journal:  Annu Rev Genet       Date:  1988       Impact factor: 16.830

6.  Identification of differentially expressed genes of the Pacific oyster Crassostrea gigas exposed to prolonged thermal stress.

Authors:  Anne-Leila Meistertzheim; Arnaud Tanguy; Dario Moraga; Marie-Thérèse Thébault
Journal:  FEBS J       Date:  2007-11-12       Impact factor: 5.542

Review 7.  Climate variations and the physiological basis of temperature dependent biogeography: systemic to molecular hierarchy of thermal tolerance in animals.

Authors:  H O Pörtner
Journal:  Comp Biochem Physiol A Mol Integr Physiol       Date:  2002-08       Impact factor: 2.320

Review 8.  Genome sequence of the nematode C. elegans: a platform for investigating biology.

Authors: 
Journal:  Science       Date:  1998-12-11       Impact factor: 47.728

9.  Transcriptional expression levels of cell stress marker genes in the Pacific oyster Crassostrea gigas exposed to acute thermal stress.

Authors:  Emilie Farcy; Claire Voiseux; Jean-Marc Lebel; Bruno Fiévet
Journal:  Cell Stress Chaperones       Date:  2008-11-11       Impact factor: 3.667

10.  Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.

Authors:  Jo Vandesompele; Katleen De Preter; Filip Pattyn; Bruce Poppe; Nadine Van Roy; Anne De Paepe; Frank Speleman
Journal:  Genome Biol       Date:  2002-06-18       Impact factor: 13.583

View more
  10 in total

1.  Molecular characteristics of a novel HSP60 gene and its differential expression in Manila clams (Ruditapes philippinarum) under thermal and hypotonic stress.

Authors:  Jianfeng Ding; Jia Li; Dongmin Yang; Feng Yang; Hongtao Nie; Zhongming Huo; Xiwu Yan
Journal:  Cell Stress Chaperones       Date:  2017-12-22       Impact factor: 3.667

2.  Characterization of Spleen Transcriptome of Schizothorax prenanti during Aeromonas hydrophila Infection.

Authors:  Hua Ye; Shijun Xiao; Xiaoqing Wang; Zhiyong Wang; Zhengshi Zhang; Chengke Zhu; Bingjie Hu; Changhuan Lv; Shuming Zheng; Hui Luo
Journal:  Mar Biotechnol (NY)       Date:  2018-03-08       Impact factor: 3.619

3.  Evolutionary trade-offs between baseline and plastic gene expression in two congeneric oyster species.

Authors:  Ao Li; Li Li; Wei Wang; Guofan Zhang
Journal:  Biol Lett       Date:  2019-06-05       Impact factor: 3.703

4.  Identification of HSF1 Target Genes Involved in Thermal Stress in the Pacific Oyster Crassostrea gigas by ChIP-seq.

Authors:  Youli Liu; Qihui Zhu; Li Li; Wei Wang; Guofan Zhang
Journal:  Mar Biotechnol (NY)       Date:  2020-01-21       Impact factor: 3.619

5.  Transcriptome analysis provides insight into the role of the melanin pathway in two differently pigmented strains of the turtle Pelodiscus sinensis.

Authors:  Yuexiu Si; Lili Zhang; Linmeng Zhang; Feng Zhao; Qian Wang; Guoying Qian; Shangjun Yin
Journal:  Dev Genes Evol       Date:  2019-11-11       Impact factor: 0.900

6.  Effects of Antifouling Biocides on Molecular and Biochemical Defense System in the Gill of the Pacific Oyster Crassostrea gigas.

Authors:  Mi Seon Park; Young Dae Kim; Bo-Mi Kim; Youn-Jung Kim; Jang Kyun Kim; Jae-Sung Rhee
Journal:  PLoS One       Date:  2016-12-22       Impact factor: 3.240

Review 7.  A Review of Molecular Responses of Catfish to Bacterial Diseases and Abiotic Stresses.

Authors:  Tao Zhou; Zihao Yuan; Suxu Tan; Yulin Jin; Yujia Yang; Huitong Shi; Wenwen Wang; Donghong Niu; Lei Gao; Wansheng Jiang; Dongya Gao; Zhanjiang Liu
Journal:  Front Physiol       Date:  2018-08-23       Impact factor: 4.566

8.  RNAi based transcriptome suggests genes potentially regulated by HSF1 in the Pacific oyster Crassostrea gigas under thermal stress.

Authors:  Youli Liu; Li Li; Baoyu Huang; Wei Wang; Guofan Zhang
Journal:  BMC Genomics       Date:  2019-08-08       Impact factor: 3.969

9.  Transcriptomics Analysis and Re-sequencing Reveal the Mechanism Underlying the Thermotolerance of an Artificial Selection Population of the Pacific Oyster.

Authors:  Yulong Tan; Rihao Cong; Haigang Qi; Luping Wang; Guofan Zhang; Ying Pan; Li Li
Journal:  Front Physiol       Date:  2021-04-22       Impact factor: 4.566

10.  Identification and Characterization of HSP90 Gene Family Reveals Involvement of HSP90, GRP94 and Not TRAP1 in Heat Stress Response in Chlamys farreri.

Authors:  Haitao Yu; Zujing Yang; Mingyi Sui; Chang Cui; Yuqing Hu; Xiujiang Hou; Qiang Xing; Xiaoting Huang; Zhenmin Bao
Journal:  Genes (Basel)       Date:  2021-10-09       Impact factor: 4.096

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.