Literature DB >> 26744902

Formation of Hexacoordinate Mn(III) in Bacillus subtilis Oxalate Decarboxylase Requires Catalytic Turnover.

Wen Zhu1, Jarett Wilcoxen2, R David Britt2, Nigel G J Richards1.   

Abstract

Oxalate decarboxylase (OxDC) catalyzes the disproportionation of oxalic acid monoanion into CO2 and formate. The enzyme has long been hypothesized to utilize dioxygen to form mononuclear Mn(III) or Mn(IV) in the catalytic site during turnover. Recombinant OxDC, however, contains only tightly bound Mn(II), and direct spectroscopic detection of the metal in higher oxidation states under optimal catalytic conditions (pH 4.2) has not yet been reported. Using parallel mode electron paramagnetic resonance spectroscopy, we now show that substantial amounts of Mn(III) are indeed formed in OxDC, but only in the presence of oxalate and dioxygen under acidic conditions. These observations provide the first direct support for proposals in which Mn(III) removes an electron from the substrate to yield a radical intermediate in which the barrier to C-C bond cleavage is significantly decreased. Thus, OxDC joins a small list of enzymes capable of stabilizing and controlling the reactivity of the powerful oxidizing species Mn(III).

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Year:  2016        PMID: 26744902      PMCID: PMC8183094          DOI: 10.1021/acs.biochem.5b01340

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  35 in total

1.  EPR spin trapping of an oxalate-derived free radical in the oxalate decarboxylase reaction.

Authors:  Witcha Imaram; Benjamin T Saylor; Christopher P Centonze; Nigel G J Richards; Alexander Angerhofer
Journal:  Free Radic Biol Med       Date:  2011-01-26       Impact factor: 7.376

2.  A closed conformation of Bacillus subtilis oxalate decarboxylase OxdC provides evidence for the true identity of the active site.

Authors:  Victoria J Just; Clare E M Stevenson; Laura Bowater; Adam Tanner; David M Lawson; Stephen Bornemann
Journal:  J Biol Chem       Date:  2004-02-10       Impact factor: 5.157

3.  The identity of the active site of oxalate decarboxylase and the importance of the stability of active-site lid conformations.

Authors:  Victoria J Just; Matthew R Burrell; Laura Bowater; Iain McRobbie; Clare E M Stevenson; David M Lawson; Stephen Bornemann
Journal:  Biochem J       Date:  2007-11-01       Impact factor: 3.857

4.  Enzymatic oxalate decarboxylation in Aspergillus niger. II. Hydrogen peroxide formation and other characteristics of the oxalate decarboxylase.

Authors:  E Emiliani; B Riera
Journal:  Biochim Biophys Acta       Date:  1968-10-08

5.  A proficient enzyme.

Authors:  A Radzicka; R Wolfenden
Journal:  Science       Date:  1995-01-06       Impact factor: 47.728

6.  Escherichia coli class Ib ribonucleotide reductase contains a dimanganese(III)-tyrosyl radical cofactor in vivo.

Authors:  Joseph A Cotruvo; Joanne Stubbe
Journal:  Biochemistry       Date:  2011-02-15       Impact factor: 3.162

7.  Oxalate decarboxylase requires manganese and dioxygen for activity. Overexpression and characterization of Bacillus subtilis YvrK and YoaN.

Authors:  A Tanner; L Bowater; S A Fairhurst; S Bornemann
Journal:  J Biol Chem       Date:  2001-08-23       Impact factor: 5.157

8.  Facile C(sp(2))-C(sp(2)) bond cleavage in oxalic acid-derived radicals.

Authors:  Robert W Molt; Alison M Lecher; Timothy Clark; Rodney J Bartlett; Nigel G J Richards
Journal:  J Am Chem Soc       Date:  2015-03-02       Impact factor: 15.419

9.  Metal dependence of oxalate decarboxylase activity.

Authors:  Ellen W Moomaw; Alexander Angerhofer; Patricia Moussatche; Andrew Ozarowski; Inés García-Rubio; Nigel G J Richards
Journal:  Biochemistry       Date:  2009-07-07       Impact factor: 3.162

10.  Assigning the EPR fine structure parameters of the Mn(II) centers in Bacillus subtilis oxalate decarboxylase by site-directed mutagenesis and DFT/MM calculations.

Authors:  Pablo Campomanes; Whitney F Kellett; Lindsey M Easthon; Andrew Ozarowski; Karen N Allen; Alexander Angerhofer; Ursula Rothlisberger; Nigel G J Richards
Journal:  J Am Chem Soc       Date:  2014-01-28       Impact factor: 15.419

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  6 in total

Review 1.  Oxygen activation by mononuclear Mn, Co, and Ni centers in biology and synthetic complexes.

Authors:  Adam T Fiedler; Anne A Fischer
Journal:  J Biol Inorg Chem       Date:  2016-11-16       Impact factor: 3.358

2.  Mn(III) species formed by the multi-copper oxidase MnxG investigated by electron paramagnetic resonance spectroscopy.

Authors:  Lizhi Tao; Troy A Stich; Alexandra V Soldatova; Bradley M Tebo; Thomas G Spiro; William H Casey; R David Britt
Journal:  J Biol Inorg Chem       Date:  2018-07-02       Impact factor: 3.358

3.  Substrate Binding Mode and Molecular Basis of a Specificity Switch in Oxalate Decarboxylase.

Authors:  Wen Zhu; Lindsey M Easthon; Laurie A Reinhardt; Chingkuang Tu; Steven E Cohen; David N Silverman; Karen N Allen; Nigel G J Richards
Journal:  Biochemistry       Date:  2016-04-04       Impact factor: 3.162

4.  Hydrogen peroxide inhibition of bicupin oxalate oxidase.

Authors:  John M Goodwin; Hassan Rana; Joan Ndungu; Gaurab Chakrabarti; Ellen W Moomaw
Journal:  PLoS One       Date:  2017-05-09       Impact factor: 3.240

5.  Biochemical properties and oxalate-degrading activity of oxalate decarboxylase from bacillus subtilis at neutral pH.

Authors:  Carolina Conter; Elisa Oppici; Mirco Dindo; Luigia Rossi; Mauro Magnani; Barbara Cellini
Journal:  IUBMB Life       Date:  2019-02-26       Impact factor: 3.885

6.  Properties of Intermediates in the Catalytic Cycle of Oxalate Oxidoreductase and Its Suicide Inactivation by Pyruvate.

Authors:  Elizabeth Pierce; Steven O Mansoorabadi; Mehmet Can; George H Reed; Stephen W Ragsdale
Journal:  Biochemistry       Date:  2017-05-23       Impact factor: 3.162

  6 in total

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