Literature DB >> 25702589

Facile C(sp(2))-C(sp(2)) bond cleavage in oxalic acid-derived radicals.

Robert W Molt1, Alison M Lecher, Timothy Clark, Rodney J Bartlett, Nigel G J Richards.   

Abstract

Oxalate decarboxylase (OxDC) catalyzes the Mn-dependent conversion of the oxalate monoanion into CO2 and formate. Many questions remain about the catalytic mechanism of OxDC although it has been proposed that the reaction proceeds via substrate-based radical intermediates. Using coupled cluster theory combined with implicit solvation models we have examined the effects of radical formation on the structure and reactivity of oxalic acid-derived radicals in aqueous solution. Our results show that the calculated solution-phase free-energy barrier for C-C bond cleavage to form CO2 is decreased from 34.2 kcal/mol for oxalic acid to only 9.3 kcal/mol and a maximum of 3.5 kcal/mol for the cationic and neutral oxalic acid-derived radicals, respectively. These studies also show that the C-C σ bonding orbital of the radical cation contains only a single electron, giving rise to an elongated C-C bond distance of 1.7 Å; a similar lengthening of the C-C bond is not observed for the neutral radical. This study provides new chemical insights into the structure and stability of plausible intermediates in the catalytic mechanism of OxDC, and suggests that removal of an electron to form a radical (with or without the concomitant loss of a proton) may be a general strategy for cleaving the unreactive C-C bonds between adjacent sp(2)-hybridized carbon atoms.

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Year:  2015        PMID: 25702589     DOI: 10.1021/ja510666r

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  6 in total

Review 1.  Oxygen activation by mononuclear Mn, Co, and Ni centers in biology and synthetic complexes.

Authors:  Adam T Fiedler; Anne A Fischer
Journal:  J Biol Inorg Chem       Date:  2016-11-16       Impact factor: 3.358

2.  Structures and Mechanisms of the Non-Heme Fe(II)- and 2-Oxoglutarate-Dependent Ethylene-Forming Enzyme: Substrate Binding Creates a Twist.

Authors:  Salette Martinez; Matthias Fellner; Caitlyn Q Herr; Anastasia Ritchie; Jian Hu; Robert P Hausinger
Journal:  J Am Chem Soc       Date:  2017-08-22       Impact factor: 15.419

3.  Formation of Hexacoordinate Mn(III) in Bacillus subtilis Oxalate Decarboxylase Requires Catalytic Turnover.

Authors:  Wen Zhu; Jarett Wilcoxen; R David Britt; Nigel G J Richards
Journal:  Biochemistry       Date:  2016-01-11       Impact factor: 3.162

4.  Substrate Binding Mode and Molecular Basis of a Specificity Switch in Oxalate Decarboxylase.

Authors:  Wen Zhu; Lindsey M Easthon; Laurie A Reinhardt; Chingkuang Tu; Steven E Cohen; David N Silverman; Karen N Allen; Nigel G J Richards
Journal:  Biochemistry       Date:  2016-04-04       Impact factor: 3.162

Review 5.  Photoelectron photofragment coincidence spectroscopy of carboxylates.

Authors:  J A Gibbard; R E Continetti
Journal:  RSC Adv       Date:  2021-10-22       Impact factor: 3.361

6.  Properties of Intermediates in the Catalytic Cycle of Oxalate Oxidoreductase and Its Suicide Inactivation by Pyruvate.

Authors:  Elizabeth Pierce; Steven O Mansoorabadi; Mehmet Can; George H Reed; Stephen W Ragsdale
Journal:  Biochemistry       Date:  2017-05-23       Impact factor: 3.162

  6 in total

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