Literature DB >> 26743942

Ribosome dimerization is essential for the efficient regrowth of Bacillus subtilis.

Genki Akanuma1, Yuka Kazo1, Kazumi Tagami1, Hirona Hiraoka1, Koichi Yano1,2, Shota Suzuki1,3, Ryo Hanai1, Hideaki Nanamiya1,4, Yasuyuki Kato-Yamada1, Fujio Kawamura5,1.   

Abstract

Ribosome dimers are a translationally inactive form of ribosomes found in Escherichia coli and many other bacterial cells. In this study, we found that the 70S ribosomes of Bacillus subtilis dimerized during the early stationary phase and these dimers remained in the cytoplasm until regrowth was initiated. Ribosome dimerization during the stationary phase required the hpf gene, which encodes a homologue of the E. coli hibernation-promoting factor (Hpf). The expression of hpf was induced at an early stationary phase and its expression was observed throughout the rest of the experimental period, including the entire 6 h of the stationary phase. Ribosome dimerization followed the induction of hpf in WT cells, but the dimerization was impaired in cells harbouring a deletion in the hpf gene. Although the absence of ribosome dimerization in these Hpf-deficient cells did not affect their viability in the stationary phase, their ability to regrow from the stationary phase decreased. Thus, following the transfer of stationary-phase cells to fresh LB medium, Δhpf mutant cells grew slower than WT cells. This observed lag in growth of Δhpf cells was probably due to a delay in restoring their translational activity. During regrowth, the abundance of ribosome dimers in WT cells decreased with a concomitant increase in the abundance of 70S ribosomes and growth rate. These results suggest that the ribosome dimers, by providing 70S ribosomes to the cells, play an important role in facilitating rapid and efficient regrowth of cells under nutrient-rich conditions.

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Year:  2016        PMID: 26743942     DOI: 10.1099/mic.0.000234

Source DB:  PubMed          Journal:  Microbiology        ISSN: 1350-0872            Impact factor:   2.777


  25 in total

Review 1.  The impact of cell structure, metabolism and group behavior for the survival of bacteria under stress conditions.

Authors:  Xinyi Zhang; Zhendong Li; Shengmei Pang; Boyu Jiang; Yang Yang; Qiangde Duan; Guoqiang Zhu
Journal:  Arch Microbiol       Date:  2020-09-25       Impact factor: 2.552

2.  Ribosome Dimerization Protects the Small Subunit.

Authors:  Heather A Feaga; Mykhailo Kopylov; Jenny Kim Kim; Marko Jovanovic; Jonathan Dworkin
Journal:  J Bacteriol       Date:  2020-04-27       Impact factor: 3.490

3.  Ribosome Reconstruction during Recovery from High-Hydrostatic-Pressure-Induced Injury in Bacillus subtilis.

Authors:  Huyen Thi Minh Nguyen; Genki Akanuma; Tu Thi Minh Hoa; Yuji Nakai; Keitarou Kimura; Kazutaka Yamamoto; Takashi Inaoka
Journal:  Appl Environ Microbiol       Date:  2019-12-13       Impact factor: 4.792

4.  Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Authors:  Bertrand Beckert; Maha Abdelshahid; Heinrich Schäfer; Wieland Steinchen; Stefan Arenz; Otto Berninghausen; Roland Beckmann; Gert Bange; Kürşad Turgay; Daniel N Wilson
Journal:  EMBO J       Date:  2017-05-03       Impact factor: 11.598

5.  Interpretation of anomalously long crosslinks in ribosome crosslinking reveals the ribosome interaction in stationary phase E. coli.

Authors:  Santosh A Misal; Bingqing Zhao; James P Reilly
Journal:  RSC Chem Biol       Date:  2022-05-16

6.  Disassembly of the Staphylococcus aureus hibernating 100S ribosome by an evolutionarily conserved GTPase.

Authors:  Arnab Basu; Mee-Ngan F Yap
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-11       Impact factor: 11.205

7.  Structures and dynamics of hibernating ribosomes from Staphylococcus aureus mediated by intermolecular interactions of HPF.

Authors:  Iskander Khusainov; Quentin Vicens; Rustam Ayupov; Konstantin Usachev; Alexander Myasnikov; Angelita Simonetti; Shamil Validov; Bruno Kieffer; Gulnara Yusupova; Marat Yusupov; Yaser Hashem
Journal:  EMBO J       Date:  2017-06-23       Impact factor: 11.598

8.  Transcription regulates ribosome hibernation.

Authors:  Heather A Feaga; Jonathan Dworkin
Journal:  Mol Microbiol       Date:  2021-06-21       Impact factor: 3.501

Review 9.  Ribosome hibernation: a new molecular framework for targeting nonreplicating persisters of mycobacteria.

Authors:  Yunlong Li; Manjuli R Sharma; Ravi K Koripella; Nilesh K Banavali; Rajendra K Agrawal; Anil K Ojha
Journal:  Microbiology (Reading)       Date:  2021-02       Impact factor: 2.777

10.  The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus.

Authors:  Donna Matzov; Shintaro Aibara; Arnab Basu; Ella Zimmerman; Anat Bashan; Mee-Ngan F Yap; Alexey Amunts; Ada E Yonath
Journal:  Nat Commun       Date:  2017-09-28       Impact factor: 14.919

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