Literature DB >> 26743685

Proposed reference sequences for hepatitis E virus subtypes.

Donald B Smith1, Peter Simmonds1, Jacques Izopet2, Edmilson F Oliveira-Filho3, Rainer G Ulrich4,5, Reimar Johne6, Matthias Koenig7, Shahid Jameel8, Tim J Harrison9, Xiang-Jin Meng10, Hiroaki Okamoto11, Wim H M Van der Poel12, Michael A Purdy13.   

Abstract

The nomenclature of hepatitis E virus (HEV) subtypes is inconsistent and makes comparison of different studies problematic. We have provided a table of proposed complete genome reference sequences for each subtype. The criteria for subtype assignment vary between different genotypes and methodologies, and so a conservative pragmatic approach has been favoured. Updates to this table will be posted on the International Committee on Taxonomy of Viruses website (http://talk.ictvonline.org/r.ashx?C). The use of common reference sequences will facilitate communication between researchers and help clarify the epidemiology of this important human pathogen. This subtyping procedure might be adopted for other taxa of the genus Orthohepevirus.

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Year:  2016        PMID: 26743685      PMCID: PMC5588893          DOI: 10.1099/jgv.0.000393

Source DB:  PubMed          Journal:  J Gen Virol        ISSN: 0022-1317            Impact factor:   3.891


  16 in total

1.  Phylogenetic analysis of 626 hepatitis E virus (HEV) isolates from humans and animals in China (1986-2011) showing genotype diversity and zoonotic transmission.

Authors:  Peng Liu; Lingjun Li; Ling Wang; Qiuning Bu; Hongwei Fu; Jian Han; Yonghong Zhu; Fengmin Lu; Hui Zhuang
Journal:  Infect Genet Evol       Date:  2012-01-28       Impact factor: 3.342

Review 2.  Phylogenetic analysis of global hepatitis E virus sequences: genetic diversity, subtypes and zoonosis.

Authors:  Ling Lu; Chunhua Li; Curt H Hagedorn
Journal:  Rev Med Virol       Date:  2006 Jan-Feb       Impact factor: 6.989

3.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors:  Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

4.  Genetic variability of HEV isolates: inconsistencies of current classification.

Authors:  Edmilson F Oliveira-Filho; Matthias König; Heinz-Jürgen Thiel
Journal:  Vet Microbiol       Date:  2013-02-04       Impact factor: 3.293

5.  Genetic variability and the classification of hepatitis E virus.

Authors:  Donald B Smith; Michael A Purdy; Peter Simmonds
Journal:  J Virol       Date:  2013-02-06       Impact factor: 5.103

6.  Indigenous hepatitis E in England and wales from 2003 to 2012: evidence of an emerging novel phylotype of viruses.

Authors:  Samreen Ijaz; Bengü Said; Elizabeth Boxall; Erasmus Smit; Dilys Morgan; Richard S Tedder
Journal:  J Infect Dis       Date:  2013-11-23       Impact factor: 5.226

7.  SSE: a nucleotide and amino acid sequence analysis platform.

Authors:  Peter Simmonds
Journal:  BMC Res Notes       Date:  2012-01-20

8.  Hepatitis E virus genotype 3 diversity: phylogenetic analysis and presence of subtype 3b in wild boar in Europe.

Authors:  Ariel Vina-Rodriguez; Josephine Schlosser; Dietmar Becher; Volker Kaden; Martin H Groschup; Martin Eiden
Journal:  Viruses       Date:  2015-05-22       Impact factor: 5.048

9.  Consensus proposals for classification of the family Hepeviridae.

Authors:  Donald B Smith; Peter Simmonds; Shahid Jameel; Suzanne U Emerson; Tim J Harrison; Xiang-Jin Meng; Hiroaki Okamoto; Wim H M Van der Poel; Michael A Purdy
Journal:  J Gen Virol       Date:  2014-07-02       Impact factor: 3.891

10.  Variability and pathogenicity of hepatitis E virus genotype 3 variants.

Authors:  Donald B Smith; Samreen Ijaz; Richard S Tedder; Boris Hogema; Hans L Zaaijer; Jacques Izopet; Amanda Bradley-Stewart; Rory Gunson; Heli Harvala; Inka Kokki; Peter Simmonds
Journal:  J Gen Virol       Date:  2015-08-14       Impact factor: 3.891

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  117 in total

Review 1.  Hiding in Plain Sight? It's Time to Investigate Other Possible Transmission Routes for Hepatitis E Virus (HEV) in Developed Countries.

Authors:  Nicola J King; Joanne Hewitt; Anne-Marie Perchec-Merien
Journal:  Food Environ Virol       Date:  2018-04-05       Impact factor: 2.778

2.  Risk Analysis and Occurrence of Hepatitis E Virus (HEV) in Domestic Swine in Northeast Brazil.

Authors:  Edmilson F de Oliveira-Filho; Kennya G S Lopes; Deivson S Cunha; Virginia S Silva; Clara N Barbosa; Daniel F Brandespim; José Wilton Pinheiro Junior; Giovani R Bertani; Laura H V G Gil
Journal:  Food Environ Virol       Date:  2017-03-27       Impact factor: 2.778

3.  Hepatitis E in Singapore: A Case-Series and Viral Phylodynamics Study.

Authors:  Esmeralda Chi-Yuan Teo; Boon-Huan Tan; Michael A Purdy; Pui-San Wong; Pei-Jun Ting; Pik-Eu Jason Chang; Lynette Lin-Ean Oon; Amanda Sue; Chong-Gee Teo; Chee-Kiat Tan
Journal:  Am J Trop Med Hyg       Date:  2017-01-16       Impact factor: 2.345

4.  Hepatitis E Virus in Pork and Variety Meats Sold in Fresh Markets.

Authors:  Duangnapa Intharasongkroh; Pattaratida Sa-Nguanmoo; Supansa Tuanthap; Thanunrat Thongmee; Ausanee Duang-In; Sirapa Klinfueng; Jira Chansaenroj; Sompong Vongpunsawad; Apiradee Theamboonlers; Sunchai Payungporn; Chintana Chirathaworn; Yong Poovorawan
Journal:  Food Environ Virol       Date:  2016-08-31       Impact factor: 2.778

5.  Hepatitis E Seroprevalence and Genotyping in a Cohort of Wild Boars in Southern Germany and Eastern Alsace.

Authors:  Kilian Weigand; Kurt Weigand; Mathias Schemmerer; Martina Müller; Juergen J Wenzel
Journal:  Food Environ Virol       Date:  2017-12-06       Impact factor: 2.778

Review 6.  Nonhuman primate models of human viral infections.

Authors:  Jacob D Estes; Scott W Wong; Jason M Brenchley
Journal:  Nat Rev Immunol       Date:  2018-06       Impact factor: 53.106

7.  Hepatitis E Virus Genotype 3 Genomes from RNA-Positive but Serologically Negative Plasma Donors Have CUG as the Start Codon for ORF3.

Authors:  Heléne Norder; Cristina Galli; Ellen Magnil; Per Sikora; Elisabet Ekvärn; Kristina Nyström; Lars O Magnius
Journal:  Intervirology       Date:  2018-10-02       Impact factor: 1.763

8.  Update: proposed reference sequences for subtypes of hepatitis E virus (species Orthohepevirus A).

Authors:  Donald B Smith; Jacques Izopet; Florence Nicot; Peter Simmonds; Shahid Jameel; Xiang-Jin Meng; Heléne Norder; Hiroaki Okamoto; Wim H M van der Poel; Gábor Reuter; Michael A Purdy
Journal:  J Gen Virol       Date:  2020-07       Impact factor: 3.891

9.  Probable transmission of hepatitis E virus (HEV) via transfusion in the United States.

Authors:  John R Ticehurst; Nora Pisanic; Michael S Forman; Carly Ordak; Christopher D Heaney; Edgar Ong; Jeffrey M Linnen; Paul M Ness; Nan Guo; Hua Shan; Kenrad E Nelson
Journal:  Transfusion       Date:  2019-01-31       Impact factor: 3.157

10.  Transmission of a Novel Genotype of Hepatitis E Virus from Bactrian Camels to Cynomolgus Macaques.

Authors:  Lin Wang; Jade L L Teng; Susanna K P Lau; Siddharth Sridhar; Hongwei Fu; Wanyun Gong; Manyu Li; Qieshi Xu; Yunye He; Hui Zhuang; Patrick C Y Woo; Ling Wang
Journal:  J Virol       Date:  2019-03-21       Impact factor: 5.103

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