| Literature DB >> 26741812 |
Fengling Wang1,2, Shuzhen Suo1,3, Liang Sun1, Jun Yang4, Fan Yang1, Chengxiao Zhao1, Xuejie Li3, Ludan Yuan3, Shuqian Yu3, Tao Qi3, Xiaoquan Zhu1, Huiping Yuan1, Zening Jin5, Lianmei Pu5, Deping Liu1, Xiaofang Sui2, Ze Yang1.
Abstract
OBJECTIVE: Shared genetic variants in ADIPOR1 have been identified as closely related to coronary artery disease (CAD), type 2 diabetes (T2D), and T2D with CAD susceptibility, suggesting that these variants are strong candidates for the common soil hypothesis. Therefore, it is essential to analyze the relationship between ADIPOR1 variants and the susceptibility to CAD, T2D, and T2D with CAD in other populations.Entities:
Mesh:
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Year: 2016 PMID: 26741812 PMCID: PMC4761852 DOI: 10.1089/gtmb.2015.0148
Source DB: PubMed Journal: Genet Test Mol Biomarkers ISSN: 1945-0257
The Allele and Genotypic Frequencies of ADIPOR1 SNPs
| n | p | n | p/ | n | p/ | n | p/ | |
|---|---|---|---|---|---|---|---|---|
| rs7539542 | ||||||||
| C | 199 (37.1) | 0.784 | 220 (34.8) | 0.410 | 215 (36.4) | 0.81 | 210 (34.8) | 0.407 |
| G | 337 (62.9) | 412 (65.2) | 0.904 | 375 (63.6) | 0.970 | 394 (65.2) | 0.902 | |
| CC | 45 (16.8) | 0.165 | 34 (10.8) | (0.711–1.149) | 36 (122) | (0.761–1.237) | 43 (14.2) | (0.708–1.150) |
| CG | 109 (40.7) | 152 (48.1) | 0.056 | 143 (48.5) | 0.115 | 124 (41.1) | 0.684 | |
| GG | 114 (42.5) | 130 (41.1) | 116 (39.3) | 135 (44.7) | ||||
| rs3737884 | ||||||||
| G | 362 (67.5) | 9.47E-7[ | 497 (78.6) | 1.82E-5[ | 468 (79.3) | 7.24E-6[ | 479 (79.3) | 6.54E-6[ |
| A | 174 (32.5) | 135 (21.4) | 1.770 | 122 (20.7) | 1.844 | 125 (20.7) | 1.842 | |
| GG | 127 (47.4) | 3.67E-7[ | 198 (62.7) | (1.362–2.301) | 184 (62.4) | (1.409–2.413) | 192 (63.5) | (1.410–2.406) |
| AG | 108 (40.3) | 101 (32.0) | 2.00E-4[ | 100 (33.9) | 3.60E-5[ | 95 (31.5) | 8.00E-5[ | |
| AA | 33 (12.3) | 17 (5.3) | 11 (62.4) | 15 (5.0) | ||||
| rs1342387 | ||||||||
| A | 201 (37.5) | 0.619 | 255 (40.6) | 0.27 | 237 (40.2) | 0.358 | 227 (38.0) | 0.873 |
| G | 335 (62.5) | 373 (59.4) | 1.139 | 353 (59.8) | 1.118 | 371 (62.0) | 1.019 | |
| AA | 43 (16.1) | 0.688 | 57 (18.2) | (0.899–1.44) | 51 (17.3) | (0.880–1.422) | 41 (13.7) | (0.802–1.297) |
| AG | 115 (42.9) | 141 (44.9) | 0.057 | 135 (45.8) | 0.608 | 145 (48.5) | 0.394 | |
| GG | 110 (41.0) | 116 (36.9) | 109 (36.9) | 113 (37.8) | ||||
| rs16850797 | ||||||||
| C | 138 (25.7) | 0.002[ | 196 (31.0) | 0.047 | 201 (34.7) | 0.001[ | 213 (35.3) | 0.001[ |
| G | 398 (74.3) | 436 (69.0) | 1.293 | 379 (65.3) | 1.529 | 391 (64.7) | 1.571 | |
| CC | 21 (7.8) | 0.001[ | 47 (14.9) | (1.002–1.675) | 36 (12.4) | (1.181–1.980) | 54 (17.9) | (1.217–2.028) |
| CG | 96 (35.9) | 102 (32.3) | 0.029 | 129 (44.5) | 0.005[ | 105 (34.8) | 0.001[ | |
| GG | 151 (56.3) | 167 (52.8) | 125 (43.1) | 143 (47.4) | ||||
| rs12045862 | ||||||||
| C | 248 (46.3) | 0.05 | 324 (51.9) | 0.055 | 298 (54.6) | 0.016 | 303 (50.7) | 0.139 |
| T | 288 (53.7) | 300 (48.1) | 1.234 | 248 (45.4) | 1.395 | 295 (49.3) | 1.192 | |
| CC | 64 (23.9) | 0.14 | 84 (26.9) | (0.995–1.580) | 87 (31.9) | (1.098–1.772) | 79 (25.4) | (0.944–1.506) |
| CT | 120 (44.8) | 156 (50.0) | 0.082 | 124 (45.4) | 0.032 | 145 (48.5) | 0.252 | |
| TT | 84 (31.3) | 72 (23.1) | 62 (22.7) | 75 (25.1) | ||||
| rs7514221 | ||||||||
| C | 62 (11.6) | 0.013[ | 111 (17.6) | 0.004[ | 106 (18.0) | 0.002[ | 110 (16.6) | 0.002[ |
| T | 474 (88.4) | 521 (82.4) | 1.629 | 484 (82.0) | 1.674 | 494 (83.4) | 1.702 | |
| CC | 5 (1.9) | 0.017[ | 9 (2.8) | (1.165–2.276) | 9 (3.1) | (1.194–2.347) | 13 (2.3) | (1.217–2.382) |
| CT | 52 (19.4) | 93 (29.7) | 0.018 | 88 (29.8) | 0.009[ | 84 (26.8) | 0.010[ | |
| TT | 211 (78.7) | 214 (67.7) | 198 (67.1) | 205 (70.9) | ||||
p ≤ 0.05/3 = 0.017. n refers to number of individuals. Values are given as allele or genotype frequencies, proportions (%), and OR (95% CI); differences were compared using the Pearson's χ2method.
Significance indicates difference between case and control p ≤ 0.05.
Significance indicates CAD versus control.
Significance indicates T2D versus control.
Significance indicates T2D with CAD versus control.
CAD, coronary artery disease; CI, confidence interval; OR, odds ratio; SNP, single-nucleotide polymorphism; T2D, type 2 diabetes.
Association Between Related ADIPOR1 SNPs and CAD, T2D, and T2D with CAD in Common Genetic Models
| p | p | p | |||||||
|---|---|---|---|---|---|---|---|---|---|
| rs3737884 | |||||||||
| Codominant | |||||||||
| GG | 3.39E-4 | 3.026 | 1.618–5.660 | 2.02E-5 | 4.346 | 2.118–8.919 | 1.64E-4 | 3.326 | 1.736–6.376 |
| GA | 0.068 | 1.815 | 0.952–3.450 | 0.005 | 2.778 | 1.333–5.791 | 0.051 | 1.935 | 0.991–3.784 |
| AA | Rf | — | — | Rf | — | — | Rf | — | — |
| Dominant | |||||||||
| GG+GA | 0.003 | 2.470 | 1.343–4.544 | 1.51E-04 | 3.626 | 1.793–7.330 | 0.002 | 2.687 | 1.425–5.066 |
| AA | |||||||||
| Recessive | |||||||||
| GG | 2.14E-4 | 1.863 | 1.338–2.593 | 3.55E-04 | 1.84 | 1.315–2.576 | 1.02E-04 | 1.938 | 1.386–2.710 |
| GA+AA | |||||||||
| rs16850797 | |||||||||
| Codominant | |||||||||
| CC | 0.012 | 2.024 | 1.156–3.541 | 0.014 | 2.071 | 1.150–3.729 | 2.92E-4 | 2.715 | 1.561–4.723 |
| CG | 0.025 | 0.961 | 0.674–1.370 | 0.007 | 1.623 | 1.138–2.315 | 0.432 | 1.155 | 0.807–1.654 |
| GG | Rf | — | — | Rf | — | — | Rf | — | — |
| Dominant | |||||||||
| CC+CG | 0.398 | 1.151 | 0.830–1.597 | 0.002 | 1.704 | 1.219–2.384 | 0.032 | 1.435 | 1.031–1.997 |
| GG | |||||||||
| Recessive | |||||||||
| CC | 0.008 | 2.055 | 1.194–3.536 | 0.014 | 1.667 | 1.124–2.936 | 3.98E-04 | 2.561 | 1.502–4.368 |
| CG+GG | |||||||||
| rs7514221 | |||||||||
| Codominant | |||||||||
| CC | 0.305 | 1.775 | 0.585–5.383 | 0.243 | 1.918 | 0.632–5.822 | 0.057 | 2.676 | 0.937–7.641 |
| CT | 0.004 | 1.763 | 1.195–2.602 | 0.003 | 1.803 | 1.216–2.674 | 0.011 | 1.663 | 1.119–2.470 |
| TT | Rf | — | — | Rf | — | — | Rf | — | — |
| Dominant | |||||||||
| CC+CT | 0.003 | 1.764 | 1.212–2.569 | 0.002 | 1.813 | 1.240–2.653 | 0.004 | 1.752 | 1.199–2.560 |
| TT | |||||||||
| Recessive | |||||||||
| CC | 0.439 | 1.542 | 0.510–4.658 | 0.367 | 1.655 | 0.548–5.002 | 0.097 | 2.366 | 0.832–6.727 |
| CT+TT | |||||||||
Values are given as OR and 95% CI. Differences were compared by Pearson's χ2 test. p ≤ 0.017 was considered to be statistically significant.
Haplotype Analysis for ADIPOR1 SNPs and CAD, T2D, and T2D with CAD
| p | ||||||
|---|---|---|---|---|---|---|
| CAD versus control | ||||||
| A C T | 15.21 (0.024) | 24.56 (0.148) | 4.046 | 0.044 | 0.518 | 0.271–0.994 |
| A G T | 114.23 (0.181) | 147.70 (0.003) | 14.404 | 1.49E-4 | 0.585 | 0.443–0.773 |
| G C T | 163.56 (0.259) | 101.55 (0.189) | 8.535 | 0.003 | 1.518 | 1.146–2.011 |
| G G C | 90.74 (0.144) | 49.96 (0.093) | 7.300 | 0.007 | 1.652 | 1.145–2.385 |
| C G T | 228.00 (0.361) | 200.19 (0.106) | 0.106 | 0.745 | 0.961 | 0.755–1.222 |
| T2D versus control | ||||||
| A C T | 20.54 (0.035) | 24.56 (0.046) | 0.745 | 0.387 | 0.769 | 0.423–1.399 |
| A G T | 100.36 (0.173) | 147.70 (0.276) | 16.652 | 4.54E-5 | 0.552 | 0.414–0.736 |
| G C T | 164.34 (0.018) | 101.55 (0.068) | 14.026 | 1.82E-4 | 1.711 | 1.290–2.270 |
| G G C | 88.84 (0.153) | 49.96 (0.093) | 9.440 | 0.002 | 1.774 | 1.227–2.567 |
| C G T | 189.76 (0.327) | 200.19 (0.373) | 2.448 | 0.117 | 0.820 | 0.640–1.051 |
| T2D with CAD versus control | ||||||
| A C T | 25.26 (0.042) | 24.56 (0.046) | 0.095 | 0.758 | 0.915 | 0.518–1.614 |
| A G T | 94.28 (0.156) | 147.70 (0.276) | 23.773 | 1.10E-6 | 0.489 | 0.366–0.654 |
| G C T | 164.02 (0.272) | 101.55 (0.189) | 11.088 | 8.74E-4 | 1.608 | 1.214–2.130 |
| G G C | 68.10 (0.113) | 49.96 (0.093) | 1.242 | 0.265 | 1.245 | 0.847–1.830 |
| G G T | 225.43 (0.373) | 200.19 (0.373) | 0.004 | 0.947 | 1.008 | 0.792–1.283 |
All those with frequency <0.03 in both the case and control were excluded from the analysis. Pearson's χ2 analysis was performed; a significance level was set at p ≤ 0.05.