Literature DB >> 26736369

Automatic detection of cell divisions (mitosis) in live-imaging microscopy images using Convolutional Neural Networks.

Anat Shkolyar, Amit Gefen, Dafna Benayahu, Hayit Greenspan.   

Abstract

We propose a semi-automated pipeline for the detection of possible cell divisions in live-imaging microscopy and the classification of these mitosis candidates using a Convolutional Neural Network (CNN). We use time-lapse images of NIH3T3 scratch assay cultures, extract patches around bright candidate regions that then undergo segmentation and binarization, followed by a classification of the binary patches into either containing or not containing cell division. The classification is performed by training a Convolutional Neural Network on a specially constructed database. We show strong results of AUC = 0.91 and F-score = 0.89, competitive with state-of-the-art methods in this field.

Mesh:

Year:  2015        PMID: 26736369     DOI: 10.1109/EMBC.2015.7318469

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  4 in total

1.  Classification of C2C12 cells at differentiation by convolutional neural network of deep learning using phase contrast images.

Authors:  Hirohiko Niioka; Satoshi Asatani; Aina Yoshimura; Hironori Ohigashi; Seiichi Tagawa; Jun Miyake
Journal:  Hum Cell       Date:  2017-12-13       Impact factor: 4.174

2.  PSF correction in soft X-ray tomography.

Authors:  Axel Ekman; Venera Weinhardt; Jian-Hua Chen; Gerry McDermott; Mark A Le Gros; Carolyn Larabell
Journal:  J Struct Biol       Date:  2018-06-13       Impact factor: 2.867

Review 3.  Convolutional neural networks in medical image understanding: a survey.

Authors:  D R Sarvamangala; Raghavendra V Kulkarni
Journal:  Evol Intell       Date:  2021-01-03

Review 4.  Artificial intelligence and digital pathology: Opportunities and implications for immuno-oncology.

Authors:  Faranak Sobhani; Ruth Robinson; Azam Hamidinekoo; Ioannis Roxanis; Navita Somaiah; Yinyin Yuan
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2021-02-06       Impact factor: 11.414

  4 in total

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