Literature DB >> 26735698

Genomics of Immune Diseases and New Therapies.

Michael Lenardo1, Bernice Lo1, Carrie L Lucas1.   

Abstract

Genomic DNA sequencing technologies have been one of the great advances of the 21st century, having decreased in cost by seven orders of magnitude and opening up new fields of investigation throughout research and clinical medicine. Genomics coupled with biochemical investigation has allowed the molecular definition of a growing number of new genetic diseases that reveal new concepts of immune regulation. Also, defining the genetic pathogenesis of these diseases has led to improved diagnosis, prognosis, genetic counseling, and, most importantly, new therapies. We highlight the investigational journey from patient phenotype to treatment using the newly defined XMEN disease, caused by the genetic loss of the MAGT1 magnesium transporter, as an example. This disease illustrates how genomics yields new fundamental immunoregulatory insights as well as how research genomics is integrated into clinical immunology. At the end, we discuss two other recently described diseases, CHAI/LATAIE (CTLA-4 deficiency) and PASLI (PI3K dysregulation), as additional examples of the journey from unknown immunological diseases to new precision medicine treatments using genomics.

Entities:  

Keywords:  biochemical; genomics; immune disorder; mechanism; targeted therapy

Mesh:

Substances:

Year:  2015        PMID: 26735698      PMCID: PMC5736009          DOI: 10.1146/annurev-immunol-041015-055620

Source DB:  PubMed          Journal:  Annu Rev Immunol        ISSN: 0732-0582            Impact factor:   28.527


  121 in total

Review 1.  Koch's postulates for cholesterol.

Authors:  M S Brown; J L Goldstein
Journal:  Cell       Date:  1992-10-16       Impact factor: 41.582

2.  Clan genomics and the complex architecture of human disease.

Authors:  James R Lupski; John W Belmont; Eric Boerwinkle; Richard A Gibbs
Journal:  Cell       Date:  2011-09-30       Impact factor: 41.582

Review 3.  XMEN disease: a new primary immunodeficiency affecting Mg2+ regulation of immunity against Epstein-Barr virus.

Authors:  Feng-Yen Li; Benjamin Chaigne-Delalande; Helen Su; Gulbu Uzel; Helen Matthews; Michael J Lenardo
Journal:  Blood       Date:  2014-02-18       Impact factor: 22.113

4.  Natural Variation in Gene Expression Modulates the Severity of Mutant Phenotypes.

Authors:  Victoria Vu; Adrian J Verster; Michael Schertzberg; Tungalag Chuluunbaatar; Mark Spensley; Djina Pajkic; G Traver Hart; Jason Moffat; Andrew G Fraser
Journal:  Cell       Date:  2015-07-16       Impact factor: 41.582

Review 5.  Idelalisib: A Novel PI3Kδ Inhibitor for Chronic Lymphocytic Leukemia.

Authors:  Arpita Shah; Abhishek Mangaonkar
Journal:  Ann Pharmacother       Date:  2015-07-16       Impact factor: 3.154

6.  Autosomal recessive phosphoglucomutase 3 (PGM3) mutations link glycosylation defects to atopy, immune deficiency, autoimmunity, and neurocognitive impairment.

Authors:  Yu Zhang; Xiaomin Yu; Mie Ichikawa; Jonathan J Lyons; Shrimati Datta; Ian T Lamborn; Huie Jing; Emily S Kim; Matthew Biancalana; Lynne A Wolfe; Thomas DiMaggio; Helen F Matthews; Sarah M Kranick; Kelly D Stone; Steven M Holland; Daniel S Reich; Jason D Hughes; Huseyin Mehmet; Joshua McElwee; Alexandra F Freeman; Hudson H Freeze; Helen C Su; Joshua D Milner
Journal:  J Allergy Clin Immunol       Date:  2014-02-28       Impact factor: 10.793

Review 7.  Nonsense-mediated decay in genetic disease: friend or foe?

Authors:  Jake N Miller; David A Pearce
Journal:  Mutat Res Rev Mutat Res       Date:  2014-05-28       Impact factor: 5.657

8.  Deleterious- and disease-allele prevalence in healthy individuals: insights from current predictions, mutation databases, and population-scale resequencing.

Authors:  Yali Xue; Yuan Chen; Qasim Ayub; Ni Huang; Edward V Ball; Matthew Mort; Andrew D Phillips; Katy Shaw; Peter D Stenson; David N Cooper; Chris Tyler-Smith
Journal:  Am J Hum Genet       Date:  2012-12-07       Impact factor: 11.025

9.  GATA2 haploinsufficiency caused by mutations in a conserved intronic element leads to MonoMAC syndrome.

Authors:  Amy P Hsu; Kirby D Johnson; E Liana Falcone; Rajendran Sanalkumar; Lauren Sanchez; Dennis D Hickstein; Jennifer Cuellar-Rodriguez; Jacob E Lemieux; Christa S Zerbe; Emery H Bresnick; Steven M Holland
Journal:  Blood       Date:  2013-03-15       Impact factor: 22.113

10.  A systematic survey of loss-of-function variants in human protein-coding genes.

Authors:  Daniel G MacArthur; Suganthi Balasubramanian; Adam Frankish; Ni Huang; James Morris; Klaudia Walter; Luke Jostins; Lukas Habegger; Joseph K Pickrell; Stephen B Montgomery; Cornelis A Albers; Zhengdong D Zhang; Donald F Conrad; Gerton Lunter; Hancheng Zheng; Qasim Ayub; Mark A DePristo; Eric Banks; Min Hu; Robert E Handsaker; Jeffrey A Rosenfeld; Menachem Fromer; Mike Jin; Xinmeng Jasmine Mu; Ekta Khurana; Kai Ye; Mike Kay; Gary Ian Saunders; Marie-Marthe Suner; Toby Hunt; If H A Barnes; Clara Amid; Denise R Carvalho-Silva; Alexandra H Bignell; Catherine Snow; Bryndis Yngvadottir; Suzannah Bumpstead; David N Cooper; Yali Xue; Irene Gallego Romero; Jun Wang; Yingrui Li; Richard A Gibbs; Steven A McCarroll; Emmanouil T Dermitzakis; Jonathan K Pritchard; Jeffrey C Barrett; Jennifer Harrow; Matthew E Hurles; Mark B Gerstein; Chris Tyler-Smith
Journal:  Science       Date:  2012-02-17       Impact factor: 47.728

View more
  16 in total

Review 1.  Common variable immune deficiency: Dissection of the variable.

Authors:  Charlotte Cunningham-Rundles
Journal:  Immunol Rev       Date:  2019-01       Impact factor: 12.988

2.  XMEN: welcome to the glycosphere.

Authors:  Hudson H Freeze
Journal:  J Clin Invest       Date:  2020-01-02       Impact factor: 14.808

3.  GIMAP6 regulates autophagy, immune competence, and inflammation in mice and humans.

Authors:  Yikun Yao; Ping Du Jiang; Brittany N Chao; Deniz Cagdas; Andrew J McMichael; Anna Katharina Simon; Michael J Lenardo; Satoshi Kubo; Arasu Balasubramaniyam; Yu Zhang; Bella Shadur; Adeeb NaserEddin; Les R Folio; Benjamin Schwarz; Eric Bohrnsen; Lixin Zheng; Matthew Lynberg; Simone Gottlieb; Michael A Leney-Greene; Ann Y Park; Ilhan Tezcan; Ali Akdogan; Rahsan Gocmen; Sevgen Onder; Avi Rosenberg; Elizabeth J Soilleux; Errin Johnson; Peter K Jackson; Janos Demeter; Samuel D Chauvin; Florian Paul; Matthias Selbach; Haydar Bulut; Menna R Clatworthy; Zewen K Tuong; Hanlin Zhang; Benjamin J Stewart; Catharine M Bosio; Polina Stepensky; Simon Clare; Sundar Ganesan; John C Pascall; Oliver Daumke; Geoffrey W Butcher
Journal:  J Exp Med       Date:  2022-05-13       Impact factor: 17.579

Review 4.  Exome and genome sequencing for inborn errors of immunity.

Authors:  Isabelle Meyts; Barbara Bosch; Alexandre Bolze; Bertrand Boisson; Yuval Itan; Aziz Belkadi; Vincent Pedergnana; Leen Moens; Capucine Picard; Aurélie Cobat; Xavier Bossuyt; Laurent Abel; Jean-Laurent Casanova
Journal:  J Allergy Clin Immunol       Date:  2016-10       Impact factor: 10.793

5.  Aryl hydrocarbon receptor (Ahr)-dependent Il-22 expression by type 3 innate lymphoid cells control of acute joint inflammation.

Authors:  Ramzi Nehmar; Louis Fauconnier; Jose Alves-Filho; Dieudonnée Togbe; Aurore DeCauwer; Seiamak Bahram; Marc Le Bert; Bernhard Ryffel; Philippe Georgel
Journal:  J Cell Mol Med       Date:  2021-03-18       Impact factor: 5.310

6.  Quality of TCR signaling determined by differential affinities of enhancers for the composite BATF-IRF4 transcription factor complex.

Authors:  Arifumi Iwata; Vivek Durai; Roxane Tussiwand; Carlos G Briseño; Xiaodi Wu; Gary E Grajales-Reyes; Takeshi Egawa; Theresa L Murphy; Kenneth M Murphy
Journal:  Nat Immunol       Date:  2017-03-27       Impact factor: 25.606

7.  Whole-genome sequencing of a sporadic primary immunodeficiency cohort.

Authors:  James E D Thaventhiran; Hana Lango Allen; Oliver S Burren; William Rae; Daniel Greene; Emily Staples; Zinan Zhang; James H R Farmery; Ilenia Simeoni; Elizabeth Rivers; Jesmeen Maimaris; Christopher J Penkett; Jonathan Stephens; Sri V V Deevi; Alba Sanchis-Juan; Nicholas S Gleadall; Moira J Thomas; Ravishankar B Sargur; Pavels Gordins; Helen E Baxendale; Matthew Brown; Paul Tuijnenburg; Austen Worth; Steven Hanson; Rachel J Linger; Matthew S Buckland; Paula J Rayner-Matthews; Kimberly C Gilmour; Crina Samarghitean; Suranjith L Seneviratne; David M Sansom; Andy G Lynch; Karyn Megy; Eva Ellinghaus; David Ellinghaus; Silje F Jorgensen; Tom H Karlsen; Kathleen E Stirrups; Antony J Cutler; Dinakantha S Kumararatne; Anita Chandra; J David M Edgar; Archana Herwadkar; Nichola Cooper; Sofia Grigoriadou; Aarnoud P Huissoon; Sarah Goddard; Stephen Jolles; Catharina Schuetz; Felix Boschann; Paul A Lyons; Matthew E Hurles; Sinisa Savic; Siobhan O Burns; Taco W Kuijpers; Ernest Turro; Willem H Ouwehand; Adrian J Thrasher; Kenneth G C Smith
Journal:  Nature       Date:  2020-05-06       Impact factor: 49.962

Review 8.  Epstein-Barr Virus Susceptibility in Activated PI3Kδ Syndrome (APDS) Immunodeficiency.

Authors:  Jean-Marie Carpier; Carrie L Lucas
Journal:  Front Immunol       Date:  2018-01-16       Impact factor: 7.561

9.  An Activating Janus Kinase-3 Mutation Is Associated with Cytotoxic T Lymphocyte Antigen-4-Dependent Immune Dysregulation Syndrome.

Authors:  Heiko Sic; Matthaios Speletas; Vanessa Cornacchione; Maximillian Seidl; Martin Beibel; Bolan Linghu; Fan Yang; Eirini Sevdali; Anastasios E Germenis; Edward J Oakeley; Eric Vangrevelinghe; Andreas W Sailer; Elisabetta Traggiai; Hermann Gram; Hermann Eibel
Journal:  Front Immunol       Date:  2017-12-15       Impact factor: 7.561

10.  Autoimmunity/inflammation in a monogenic primary immunodeficiency cohort.

Authors:  William Rae; Daniel Ward; Christopher J Mattocks; Yifang Gao; Reuben J Pengelly; Sanjay V Patel; Sarah Ennis; Saul N Faust; Anthony P Williams
Journal:  Clin Transl Immunology       Date:  2017-09-15
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.