Literature DB >> 26731610

Polyketide Ring Expansion Mediated by a Thioesterase, Chain Elongation and Cyclization Domain, in Azinomycin Biosynthesis: Characterization of AziB and AziG.

Shogo Mori1, Dinesh Simkhada1, Huitu Zhang1, Megan S Erb2, Yang Zhang2, Howard Williams1, Dmytro Fedoseyenko1, William K Russell1, Doyong Kim1, Nathan Fleer1, Steven E Ealick2, Coran M H Watanabe1.   

Abstract

The azinomycins are a family of potent antitumor agents with the ability to form interstrand cross-links with DNA. This study reports on the unusual biosynthetic formation of the 5-methyl naphthoate moiety, which is essential for effective DNA association. While sequence analysis predicts that the polyketide synthase (AziB) catalyzes the formation of this naphthoate, 2-methylbenzoic acid, a truncated single-ring product, is formed instead. We demonstrate that the thioesterase (AziG) acts as a chain elongation and cyclization (CEC) domain and is required for the additional two rounds of chain extension to form the expected product.

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Year:  2016        PMID: 26731610      PMCID: PMC4738070          DOI: 10.1021/acs.biochem.5b01050

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  28 in total

1.  Role of type II thioesterases: evidence for removal of short acyl chains produced by aberrant decarboxylation of chain extender units.

Authors:  M L Heathcote; J Staunton; P F Leadlay
Journal:  Chem Biol       Date:  2001-02

2.  An approach to multi-copy search in molecular replacement.

Authors:  A Vagin; A Teplyakov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-12

3.  Crystal structure of the macrocycle-forming thioesterase domain of the erythromycin polyketide synthase: versatility from a unique substrate channel.

Authors:  S C Tsai; L J Miercke; J Krucinski; R Gokhale; J C Chen; P G Foster; D E Cane; C Khosla; R M Stroud
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-18       Impact factor: 11.205

4.  Clinical studies of carzinophilin, an antitumor substance.

Authors:  N SHIMADA; M UEKUSA; T DENDA; Y ISHII; T IIZUKA; Y SATO; T HATORI; M FUKUI; M SUDO
Journal:  J Antibiot (Tokyo)       Date:  1955-06       Impact factor: 2.649

5.  A novel induced-fit reaction mechanism of asymmetric hot dog thioesterase PAAI.

Authors:  Naoki Kunishima; Yukuhiko Asada; Mayumi Sugahara; Jun Ishijima; Yuichi Nodake; Mitsuaki Sugahara; Masashi Miyano; Seiki Kuramitsu; Shigeyuki Yokoyama; Michihiro Sugahara
Journal:  J Mol Biol       Date:  2005-09-09       Impact factor: 5.469

6.  Studies on the mechanism of action of azinomycin B: definition of regioselectivity and sequence selectivity of DNA cross-link formation and clarification of the role of the naphthoate.

Authors:  Robert S Coleman; Ronelito J Perez; Christopher H Burk; Antonio Navarro
Journal:  J Am Chem Soc       Date:  2002-11-06       Impact factor: 15.419

7.  DNA binding and alkylation by the "left half" of azinomycin B.

Authors:  H Zang; K S Gates
Journal:  Biochemistry       Date:  2000-12-05       Impact factor: 3.162

8.  Structural basis for the cyclization of the lipopeptide antibiotic surfactin by the thioesterase domain SrfTE.

Authors:  Steven D Bruner; Thomas Weber; Rahul M Kohli; Dirk Schwarzer; Mohamed A Marahiel; Christopher T Walsh; Milton T Stubbs
Journal:  Structure       Date:  2002-03       Impact factor: 5.006

9.  Cloning and characterization of a phosphopantetheinyl transferase from Streptomyces verticillus ATCC15003, the producer of the hybrid peptide-polyketide antitumor drug bleomycin.

Authors:  C Sánchez; L Du; D J Edwards; M D Toney; B Shen
Journal:  Chem Biol       Date:  2001-07

10.  Mechanism and specificity of the terminal thioesterase domain from the erythromycin polyketide synthase.

Authors:  R S Gokhale; D Hunziker; D E Cane; C Khosla
Journal:  Chem Biol       Date:  1999-02
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  2 in total

1.  Thioesterase enzyme families: Functions, structures, and mechanisms.

Authors:  Benjamin T Caswell; Caio C de Carvalho; Hung Nguyen; Monikrishna Roy; Tin Nguyen; David C Cantu
Journal:  Protein Sci       Date:  2022-01-04       Impact factor: 6.725

Review 2.  Biosynthesis of DNA-Alkylating Antitumor Natural Products.

Authors:  Qiu-Yue Nie; Yu Hu; Xian-Feng Hou; Gong-Li Tang
Journal:  Molecules       Date:  2022-09-27       Impact factor: 4.927

  2 in total

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