Literature DB >> 26729909

Use of the BioGRID Database for Analysis of Yeast Protein and Genetic Interactions.

Rose Oughtred1, Andrew Chatr-aryamontri2, Bobby-Joe Breitkreutz3, Christie S Chang1, Jennifer M Rust1, Chandra L Theesfeld1, Sven Heinicke1, Ashton Breitkreutz3, Daici Chen2, Jodi Hirschman1, Nadine Kolas3, Michael S Livstone1, Julie Nixon4, Lara O'Donnell3, Lindsay Ramage4, Andrew Winter4, Teresa Reguly3, Adnane Sellam2, Chris Stark3, Lorrie Boucher3, Kara Dolinski1, Mike Tyers5.   

Abstract

The BioGRID database is an extensive repository of curated genetic and protein interactions for the budding yeast Saccharomyces cerevisiae, the fission yeast Schizosaccharomyces pombe, and the yeast Candida albicans SC5314, as well as for several other model organisms and humans. This protocol describes how to use the BioGRID website to query genetic or protein interactions for any gene of interest, how to visualize the associated interactions using an embedded interactive network viewer, and how to download data files for either selected interactions or the entire BioGRID interaction data set.
© 2016 Cold Spring Harbor Laboratory Press.

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Year:  2016        PMID： 26729909      PMCID： PMC5975959          DOI： 10.1101/pdb.prot088880

Source DB:  PubMed          Journal:  Cold Spring Harb Protoc        ISSN： 1559-6095


  27 in total

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4.  GeneMANIA prediction server 2013 update.

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Journal:  J Biol       Date:  2006-06-08

9.  The PhosphoGRID Saccharomyces cerevisiae protein phosphorylation site database: version 2.0 update.

Authors:  Ivan Sadowski; Bobby-Joe Breitkreutz; Chris Stark; Ting-Cheng Su; Matthew Dahabieh; Sheetal Raithatha; Wendy Bernhard; Rose Oughtred; Kara Dolinski; Kris Barreto; Mike Tyers
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4.  The BioGRID interaction database: 2017 update.

Authors:  Andrew Chatr-Aryamontri; Rose Oughtred; Lorrie Boucher; Jennifer Rust; Christie Chang; Nadine K Kolas; Lara O'Donnell; Sara Oster; Chandra Theesfeld; Adnane Sellam; Chris Stark; Bobby-Joe Breitkreutz; Kara Dolinski; Mike Tyers
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8.  Bioinformatics and Microarray Analysis of miRNAs in Aged Female Mice Model Implied New Molecular Mechanisms for Impaired Fracture Healing.

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Review 9.  FAM83 proteins: Fostering new interactions to drive oncogenic signaling and therapeutic resistance.

Authors:  Courtney A Bartel; Neetha Parameswaran; Rocky Cipriano; Mark W Jackson
Journal:  Oncotarget       Date:  2016-08-09

10.  Identifying key regulating miRNAs in hepatocellular carcinomas by an omics' method.

Authors:  Bing He; Peng Lu; Lei Guan; Ting Li; Lei Zhang; Qing-Ge Zhu; Xiao-Xiao Ding; Shi-Ming Zhang; Xue-Mei Chen; Jing Zhao; Song Lin; Zhi-Zhen Liu; Fang-E Liu; Wang Ma; Hu-Qin Zhang
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