Literature DB >> 27262731

DNA Polymerases Divide the Labor of Genome Replication.

Scott A Lujan1, Jessica S Williams1, Thomas A Kunkel2.   

Abstract

DNA polymerases synthesize DNA in only one direction, but large genomes require RNA priming and bidirectional replication from internal origins. We review here the physical, chemical, and evolutionary constraints underlying these requirements. We then consider the roles of the major eukaryotic replicases, DNA polymerases α, δ, and ɛ, in replicating the nuclear genome. Pol α has long been known to extend RNA primers at origins and on Okazaki fragments that give rise to the nascent lagging strand. Taken together, more recent results of mutation and ribonucleotide incorporation mapping, electron microscopy, and immunoprecipitation of nascent DNA now lead to a model wherein Pol ɛ and Pol δ, respectively, synthesize the majority of the nascent leading and lagging strands of undamaged DNA. Published by Elsevier Ltd.

Entities:  

Keywords:  DNA replication; evolution; genomic ribonucleotide; polymerase; replication fork

Mesh:

Substances:

Year:  2016        PMID: 27262731      PMCID: PMC4993630          DOI: 10.1016/j.tcb.2016.04.012

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  82 in total

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Authors:  S Waga; B Stillman
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4.  Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair.

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10.  Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition.

Authors:  Scott A Lujan; Anders R Clausen; Alan B Clark; Heather K MacAlpine; David M MacAlpine; Ewa P Malc; Piotr A Mieczkowski; Adam B Burkholder; David C Fargo; Dmitry A Gordenin; Thomas A Kunkel
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  73 in total

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6.  The absence of the catalytic domains of Saccharomyces cerevisiae DNA polymerase ϵ strongly reduces DNA replication fidelity.

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Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

Review 7.  Structure and function relationships in mammalian DNA polymerases.

Authors:  Nicole M Hoitsma; Amy M Whitaker; Matthew A Schaich; Mallory R Smith; Max S Fairlamb; Bret D Freudenthal
Journal:  Cell Mol Life Sci       Date:  2019-11-13       Impact factor: 9.261

Review 8.  Mechanistic cross-talk between DNA/RNA polymerase enzyme kinetics and nucleotide substrate availability in cells: Implications for polymerase inhibitor discovery.

Authors:  Si'Ana A Coggins; Bijan Mahboubi; Raymond F Schinazi; Baek Kim
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9.  Activity and fidelity of human DNA polymerase α depend on primer structure.

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10.  A PoleP286R mouse model of endometrial cancer recapitulates high mutational burden and immunotherapy response.

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