Literature DB >> 26723898

Multi-locus plastid phylogenetic biogeography supports the Asian hypothesis of the temperate woody bamboos (Poaceae: Bambusoideae).

Xian-Zhi Zhang1, Chun-Xia Zeng2, Peng-Fei Ma3, Thomas Haevermans4, Yu-Xiao Zhang3, Li-Na Zhang1, Zhen-Hua Guo5, De-Zhu Li6.   

Abstract

In this paper we investigate the biogeography of the temperate woody bamboos (Arundinarieae) using a densely-sampled phylogenetic tree of Bambusoideae based on six plastid DNA loci, which corroborates the previously discovered 12 lineages (I-XII) and places Kuruna as sister to the Chimonocalamus clade. Biogeographic analyses revealed that the Arundinarieae diversified from an estimated 12 to 14Mya, and this was followed by rapid radiation within the lineages, particularly lineages IV, V and VI, starting from c. 7-8Mya. It is suggested that the late Miocene intensification of East Asian monsoon may have contributed to this burst of diversification. The possibilities of the extant Sri Lankan and African temperate bamboo lineages representing 'basal elements' could be excluded, indicating that there is no evidence to support the Indian or African route for migration of temperate bamboo ancestors to Asia. Radiations from eastern Asia to Africa, Sri Lanka, and to North America all are likely to have occurred during the Pliocene, to form the disjunct distribution of Arundinarieae we observe today. The two African lineages are inferred as being derived independently from Asian ancestors, either by overland migrations or long-distance dispersals. Beringian migration may explain the eastern Asian-eastern North American disjunction.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Arundinarieae; Bambusoideae; Biogeography; Divergence time; Multi-locus plastid phylogeny; Rapid radiation

Mesh:

Year:  2015        PMID: 26723898     DOI: 10.1016/j.ympev.2015.11.025

Source DB:  PubMed          Journal:  Mol Phylogenet Evol        ISSN: 1055-7903            Impact factor:   4.286


  16 in total

1.  A 250 plastome phylogeny of the grass family (Poaceae): topological support under different data partitions.

Authors:  Jeffery M Saarela; Sean V Burke; William P Wysocki; Matthew D Barrett; Lynn G Clark; Joseph M Craine; Paul M Peterson; Robert J Soreng; Maria S Vorontsova; Melvin R Duvall
Journal:  PeerJ       Date:  2018-02-02       Impact factor: 2.984

2.  The complete chloroplast genome and phylogenetic position of Thamnocalamus unispiculatus (Poaceae: Bambusoideae: Arundinarieae).

Authors:  Weihua Wang; Shiyu Lv; Li Liu; Yuanyan Meng; Xiaolong Zhang; Xiaying Ye
Journal:  Mitochondrial DNA B Resour       Date:  2022-06-28       Impact factor: 0.610

3.  Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants.

Authors:  Guo-Qian Yang; Yun-Mei Chen; Jin-Peng Wang; Cen Guo; Lei Zhao; Xiao-Yan Wang; Ying Guo; Li Li; De-Zhu Li; Zhen-Hua Guo
Journal:  Plant Methods       Date:  2016-08-04       Impact factor: 4.993

4.  Chloroplast Genome Evolution in Actinidiaceae: clpP Loss, Heterogenous Divergence and Phylogenomic Practice.

Authors:  Wen-Cai Wang; Si-Yun Chen; Xian-Zhi Zhang
Journal:  PLoS One       Date:  2016-09-02       Impact factor: 3.240

5.  Genome-wide RAD sequencing data provide unprecedented resolution of the phylogeny of temperate bamboos (Poaceae: Bambusoideae).

Authors:  Xueqin Wang; Xiaying Ye; Lei Zhao; Dezhu Li; Zhenhua Guo; Huifu Zhuang
Journal:  Sci Rep       Date:  2017-09-14       Impact factor: 4.379

6.  Differentiating Thamnocalamus Munro from Fargesia Franchet emend. Yi (Bambusoideae, Poaceae): novel evidence from morphological and neural-network analyses.

Authors:  Shiliang Liu; Rongjie Yang; Jun Yang; Tongpei Yi; Huixing Song; Mingyan Jiang; Durgesh K Tripathi; Mingdong Ma; Qibing Chen
Journal:  Sci Rep       Date:  2017-06-23       Impact factor: 4.379

7.  A comparison of different methods for preserving plant molecular materials and the effect of degraded DNA on ddRAD sequencing.

Authors:  Ying Guo; GuoQian Yang; Yunmei Chen; Dezhu Li; Zhenhua Guo
Journal:  Plant Divers       Date:  2018-04-22

8.  Parallel ddRAD and Genome Skimming Analyses Reveal a Radiative and Reticulate Evolutionary History of the Temperate Bamboos.

Authors:  Cen Guo; Peng-Fei Ma; Guo-Qian Yang; Xia-Ying Ye; Ying Guo; Jing-Xia Liu; Yun-Long Liu; Deren A R Eaton; Zhen-Hua Guo; De-Zhu Li
Journal:  Syst Biol       Date:  2021-06-16       Impact factor: 15.683

9.  Negative correlation between rates of molecular evolution and flowering cycles in temperate woody bamboos revealed by plastid phylogenomics.

Authors:  Peng-Fei Ma; Maria S Vorontsova; Olinirina Prisca Nanjarisoa; Jacqueline Razanatsoa; Zhen-Hua Guo; Thomas Haevermans; De-Zhu Li
Journal:  BMC Plant Biol       Date:  2017-12-21       Impact factor: 4.215

10.  A new genus of temperate woody bamboos (Poaceae, Bambusoideae, Arundinarieae) from a limestone montane area of China.

Authors:  Yu-Xiao Zhang; Peng-Fei Ma; De-Zhu Li
Journal:  PhytoKeys       Date:  2018-10-12       Impact factor: 1.635

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