| Literature DB >> 26719709 |
Duck Hyoun Jeong1, Woo Ram Kim1, Byung Soh Min1, Young Wan Kim2, Mi Kyung Song3, Nam Kyu Kim1.
Abstract
PURPOSE: To evaluate the Recurrence Score(®) of the quantitative 12-multigene expression assay and to determine risk groups based on the continuous Recurrence Score(®) in Korean patients.Entities:
Keywords: adjuvant chemotherapy; colonic neoplasms; ethnic groups; gene expression
Year: 2015 PMID: 26719709 PMCID: PMC4689269 DOI: 10.2147/OTT.S95543
Source DB: PubMed Journal: Onco Targets Ther ISSN: 1178-6930 Impact factor: 4.147
Figure 1Total RNA quality control.
Notes: (A) The total RNA sample is shown as 18S and 28S bands by electrophoresis on a 1% formaldehyde gel. (B and C) Each sample was assessed for integrity using the Agilent Bioanalyzer 2100. The bioanalyzer software generates a gel-like image and an electropherogram. The RNA quality was determined by visual inspection of the electropherogram, 260/280 and 260/230 ratio, concentrations, and the RIN.
Abbreviations: Cont, control; DX, sample number; RIN, RNA integrity number.
Sequences of TaqMan probes and PCR primers
| Gene | Oligo | Sequence |
|---|---|---|
| Forward | CCGCTTTCGCTACAGCAT | |
| Reverse | TGGGAGTATCGGATGTAGCTG | |
| Probe | TCCAGCCTGTCTCCAGTAGGCCAC | |
| Forward | GAGCTCCGCAAGGATGAC | |
| Reverse | CTTGTTGTTCACCAGGACGA | |
| Probe | CAAGGGTCTCCAGCACCTCTACGC | |
| Forward | TCCCTCCACTCGGAAGGACTA | |
| Reverse | CGGTTGTTGCTGATCTGTCTCA | |
| Probe | TCTGACACTGTCCAACTTGACCCTCTT | |
| Forward | CTGACCAGAACCACGGCT | |
| Reverse | GGAAGTGGGTCATGTGGG | |
| Probe | CGGCCTGTCCACGAACCACTTATA | |
| Forward | ACCCTCGACAAGACCACACT | |
| Reverse | TGGGAGTTCATGGGTACAGA | |
| Probe | AACTTCAGCCCCAGCTCCCAAGTC | |
| Forward | GCTTATGACCGACCCCAA | |
| Reverse | AAAGTTCCAGGCAACATCGT | |
| Probe | CTCATCACCTGGTCTCCGGTGTGT | |
| Forward | GTGCCCGAGCCATATAGCA | |
| Reverse | CGGTAGTGGTTGATGACTGTTGA | |
| Probe | ACGTCCGGGTCCTCACTGTCCTTCC | |
| Forward | CGGACTTTGGGTGCGACTT | |
| Reverse | TTACAACTCTTCCACTGGGACGAT | |
| Probe | CCACTTGTCGAACCACCGCTCGT | |
| Forward | GCCGAGATCGCCAAGATG | |
| Reverse | CTTTTGATGGTAGAGTTCCAGTGATTC | |
| Probe | CAGCATTGTCTGTCCTCCCTGGCA | |
| Forward | AGAGCCAGTTGCTGTAGAACTCAA | |
| Reverse | CTGGGCCTACACAGTCCTTCA | |
| Probe | TCTCTGCTGGGCAAGGATGTTCTGTTC | |
| Forward | GAGTCGACCCTGCACCTG | |
| Reverse | GCGAATGCCATGACTGAA | |
| Probe | AATTAACAGCCACCCCTCAGGCG | |
| Forward | ACCCACGGACAGACTTGC | |
| Reverse | AGCTTTGCCAAGGTCAGC | |
| Probe | CGCGTCCAATGTGTATTCCTCCAT |
Notes: The TaqMan probe consists of an oligonucleotide with a 5′-reporter dye (6-FAM®) and a 3′-quencher dye (BHQ®-1). Primers and probes shown were used for analysis of ATP5E. BGN, MYC, FAP, GADD45B, GPX1, INHBA, MK167, MYBL2, PGK1, UBB, and VDAC2.
Abbreviations: PCR, Polymerase chain reaction; BHQ®-1, Black Hole Quencher®-1; FAM,.
Patient demographics and cancer characteristics
| Variables | Total patients (N=95)
| Retrospective cohort (N=56)
| Prospective cohort (N=39)
| |
|---|---|---|---|---|
| N (%) | N (%) | N (%) | ||
| Age (≥70 years) | 54 (56.8) | 31 (55.4) | 23 (59.0) | 0.389 |
| Sex (male) | 49 (51.6) | 30 (53.6) | 19 (48.7) | 0.681 |
| Carcinoembryonic antigen (≥5 ng/mL) | 24 (25.3) | 14 (25.0) | 10 (25.6) | 1.000 |
| Tumor location | 0.407 | |||
| Right/transverse colon | 56 (58.9) | 35 (62.5) | 21 (53.8) | |
| Left/sigmoid colon | 39 (41.1) | 21 (37.5) | 18 (46.2) | |
| Harvested lymph nodes (≥12) | 86 (90.5) | 47 (83.9) | 39 (100) | 0.010 |
| Histologic differentiation | 0.093 | |||
| Well | 8 (8.4) | 7 (12.5) | 1 (2.6) | |
| Moderate | 86 (90.5) | 49 (87.5) | 37 (94.9) | |
| Poor | 1 (1.1) | 0 (0) | 1 (2.6) | |
| Lymphovascular invasion (+) | 3 (3.2) | 0 (0) | 3 (7.7) | 0.066 |
| Perineural invasion (+) | 2 (2.1) | 0 (0) | 2 (5.1) | 0.087 |
| NCCN high-risk features (+) | 15 (15.8) | 11 (19.6) | 4 (10.3) | 0.263 |
| Recurrence (+) | 4 (4.2) | 4 (7.1) | 0 (0) | 0.141 |
Notes:
NCCN high-risk features are defined as number of harvested lymph nodes <12, histologically poorly differentiated, obstruction or perforation, lymphovascular invasion, perineural invasion, or positive margin.
Abbreviations: +, positive; NCCN, National Comprehensive Cancer Network.
Distribution of risk groups and characteristics of validation studies using the Oncotype DX® Colon Cancer Assay
| Study | Number of patients | Risk groups based on Recurrence Score®
| Ethnicity (%) | Age
| Sex
| Stage II (%) | pT4 stage (%) | High-grade tumor (%) | LN <12 (%) | LVI (%) | MMR-p (%) | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Low (%) | Intermediate (%) | High (%) | ≥70 (%) | Male (%) | |||||||||
| Gray et al | 1,436 | 311 (43.7) | 218 (30.7) | 182 (25.6) | NA | 24 | 58 | 100 | 15 | 31 | 35 | 14 | 87 |
| Venook et al | 690 | 266 (41.0) | 227 (35.0) | 156 (24.0) | White (92) | 35 | 52 | 100 | 6 | 32 | 47 | 11 | 79 |
| Yothers et al | 892 | 103 (39.0) | 94 (35.6) | 67 (25.4) | White (88) | 17 | 58 | 30 | 6 | 25 | 39 | NA | 88 |
| Current study | 95 | 61 (64.2) | 34 (35.8) | 0 (0.0) | Korean (100) | 57 | 52 | 100 | 0 | 1 | 10 | 3 | 100 |
Abbreviations: LN, lymph nodes; LVI, lymphovascular invasion; MMR-p, mismatch repair gene-proficient; NA, not available; p, pathological.
Four patients with recurrence
| Case | Pattern of failure | Recurrence Score® | Age (years) | Sex | CEA (ng/mL) | Tumor location | Tumor stage | Histologic grade | Number of LNs | LVI |
|---|---|---|---|---|---|---|---|---|---|---|
| Case 1 | Local | 1 | 73 | Male | 4.8 | Right | T3 | MD | 2 | – |
| Case 2 | Local | 36 | 67 | Male | 3.4 | Right | T3 | MD | 24 | – |
| Case 3 | Systemic | 21 | 50 | Male | 1.7 | Left | T3 | MD | 40 | – |
| Case 4 | Systemic | 10 | 68 | Female | 3.5 | Left | T3 | MD | 20 | – |
Abbreviations: –, negative; LN, lymph nodes; LVI, lymphovascular invasion; MD, moderately differentiated; CEA, carcinoembryonic antigen.
Figure 2Relationship between the continuous Recurrence Score® and 3-year recurrence risk.
Note: A rug plot depicting the distribution of the Recurrence Score® is included at the bottom of the figure.
Prognostic factors for recurrence-free interval in the retrospective cohort (n=56)
| Variables | Univariate
| Multivariate
| ||
|---|---|---|---|---|
| HR (95% CI) | HR (95% CI) | |||
| Dichotomous | ||||
| Sex: female vs male | 0.331 (0.034–3.181) | 0.338 | 0.514 (0.045–5.919) | 0.593 |
| Tumor location: right vs left-sided | 0.775 (0.109–5.514) | 0.799 | 1.19 (0.085–16.614) | 0.897 |
| Tumor grade: well vs moderate | <0.001 (<0.001–999.9) | 0.998 | <0.001 (<0.001–999.9) | 0.999 |
| Nodes examined: <12 vs ≥12 | 1.929 (0.200–18.570) | 0.570 | 1.98 (0.079–49.654) | 0.678 |
| NCCN risk | 1.41 (0.146–13.580) | 0.767 | 1.223 (0.056–26.882) | 0.899 |
| Continuous | ||||
| Age, years | 0.959 (0.881–1.044) | 0.335 | 0.96 (0.855–1.077) | 0.485 |
| Recurrence Score® per IQR | 0.517 (0.193–1.390) | 0.191 | 0.582 (0.203–1.672) | 0.315 |
Notes:
NCCN high-risk features are defined as number of harvested lymph nodes <12, histologically poorly differentiated, obstruction or perforation, lymphovascular invasion, perineural invasion, or positive margin.
Abbreviations: CI, confidence interval; HR, hazard ratio; IQR, interquartile range; NCCN, National Comprehensive Cancer Network; vs, versus.