Literature DB >> 26710655

Analysis of cellular signal transduction from an information theoretic approach.

Shinsuke Uda1, Shinya Kuroda2.   

Abstract

Signal transduction processes the information of various cellular functions, including cell proliferation, differentiation, and death. The information for controlling cell fate is transmitted by concentrations of cellular signaling molecules. However, how much information is transmitted in signaling pathways has thus far not been investigated. Shannon's information theory paves the way to quantitatively analyze information transmission in signaling pathways. The theory has recently been applied to signal transduction, and mutual information of signal transduction has been determined to be a measure of information transmission. We review this work and provide an overview of how signal transduction transmits informational input and exerts biological output.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Cellular information transmission; Information theory; Mutual information; Signal transduction

Mesh:

Year:  2015        PMID: 26710655     DOI: 10.1016/j.semcdb.2015.12.011

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  11 in total

1.  Robustness, Accuracy, and Cell State Heterogeneity in Biological Systems.

Authors:  Roy Wollman
Journal:  Curr Opin Syst Biol       Date:  2017-12-15

2.  Do cells use passwords in cell-state transitions? Is cell signaling sometimes encrypted?

Authors:  Alex Root
Journal:  Theory Biosci       Date:  2019-06-07       Impact factor: 1.919

3.  Temporal signaling, population control, and information processing through chromatin-mediated gene regulation.

Authors:  Adi Mukund; Lacramioara Bintu
Journal:  J Theor Biol       Date:  2021-12-14       Impact factor: 2.691

Review 4.  Quantifying information of intracellular signaling: progress with machine learning.

Authors:  Ying Tang; Alexander Hoffmann
Journal:  Rep Prog Phys       Date:  2022-07-12

5.  'Molecular habituation' as a potential mechanism of gradual homeostatic loss with age.

Authors:  Alvaro Martinez Guimera; Ciaran M Welsh; Carole J Proctor; Anne McArdle; Daryl P Shanley
Journal:  Mech Ageing Dev       Date:  2017-11-14       Impact factor: 5.432

6.  The Conservation of Average Entropy Production Rate in a Model of Signal Transduction: Information Thermodynamics Based on the Fluctuation Theorem.

Authors:  Tatsuaki Tsuruyama
Journal:  Entropy (Basel)       Date:  2018-04-21       Impact factor: 2.524

7.  Analysis of Cell Signal Transduction Based on Kullback-Leibler Divergence: Channel Capacity and Conservation of Its Production Rate during Cascade.

Authors:  Tatsuaki Tsuruyama
Journal:  Entropy (Basel)       Date:  2018-06-05       Impact factor: 2.524

Review 8.  Concepts and Applications of Information Theory to Immuno-Oncology.

Authors:  Aleksandra Karolak; Sergio Branciamore; Jeannine S McCune; Peter P Lee; Andrei S Rodin; Russell C Rockne
Journal:  Trends Cancer       Date:  2021-02-20

Review 9.  Application of information theory in systems biology.

Authors:  Shinsuke Uda
Journal:  Biophys Rev       Date:  2020-03-06

10.  Information transmission from NFkB signaling dynamics to gene expression.

Authors:  Alok Maity; Roy Wollman
Journal:  PLoS Comput Biol       Date:  2020-08-14       Impact factor: 4.475

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