Literature DB >> 31175621

Do cells use passwords in cell-state transitions? Is cell signaling sometimes encrypted?

Alex Root1.   

Abstract

Organisms must maintain proper regulation including defense and healing. Life-threatening problems may be caused by pathogens or by a multicellular organism's own cells through cancer or autoimmune disorders. Life evolved solutions to these problems that can be conceptualized through the lens of information security, which is a well-developed field in computer science. Here I argue that taking an information security view of cells is not merely semantics, but useful to explain features of signaling, regulation, and defense. An information security perspective also offers a conduit for cross-fertilization of advanced ideas from computer science and the potential for biology to inform computer science. First, I consider whether cells use passwords, i.e., initiation sequences that are required for subsequent signals to have effects, by analyzing the concept of pioneer transcription factors in chromatin regulation and cellular reprogramming. Second, I consider whether cells may encrypt signal transduction cascades. Encryption could benefit cells by making it more difficult for pathogens or oncogenes to hijack cell networks. By using numerous molecules, cells may gain a security advantage in particular against viruses, whose genome sizes are typically under selection pressure. I provide a simple conceptual argument for how cells may perform encryption through posttranslational modifications, complex formation, and chromatin accessibility. I invoke information theory to provide a criterion of an entropy spike to assess whether a signaling cascade has encryption-like features. I discuss how the frequently invoked concept of context dependency may oversimplify more advanced features of cell signaling networks, such as encryption. Therefore, by considering that biochemical networks may be even more complex than commonly realized we may be better able to understand defenses against pathogens and pathologies.

Entities:  

Keywords:  Biochemical encryption; Biochemical passwords; Cell signaling; Chromatin state; Context dependency; Host–pathogen interactions; Information security; Posttranslational modification; Reprogramming

Year:  2019        PMID: 31175621     DOI: 10.1007/s12064-019-00295-1

Source DB:  PubMed          Journal:  Theory Biosci        ISSN: 1431-7613            Impact factor:   1.919


  55 in total

1.  Error and attack tolerance of complex networks

Authors: 
Journal:  Nature       Date:  2000-07-27       Impact factor: 49.962

2.  Niche emergence as an autocatalytic process in the evolution of ecosystems.

Authors:  Roberto Cazzolla Gatti; Brian Fath; Wim Hordijk; Stuart Kauffman; Robert Ulanowicz
Journal:  J Theor Biol       Date:  2018-06-01       Impact factor: 2.691

Review 3.  Aims and methods of biosteganography.

Authors:  Tyler D P Brunet
Journal:  J Biotechnol       Date:  2016-03-25       Impact factor: 3.307

Review 4.  Signaling specificity in the Akt pathway in biology and disease.

Authors:  Alex Toker; Sandra Marmiroli
Journal:  Adv Biol Regul       Date:  2014-04-19

Review 5.  Avoidance and Subversion of Eukaryotic Homeostatic Autophagy Mechanisms by Bacterial Pathogens.

Authors:  Cheryl Miller; Jean Celli
Journal:  J Mol Biol       Date:  2016-07-22       Impact factor: 5.469

Review 6.  MicroRNAs and oncogenic transcriptional regulatory networks controlling metabolic reprogramming in cancers.

Authors:  Pannapa Pinweha; Khanti Rattanapornsompong; Varodom Charoensawan; Sarawut Jitrapakdee
Journal:  Comput Struct Biotechnol J       Date:  2016-06-04       Impact factor: 7.271

Review 7.  Origins and evolution of viruses of eukaryotes: The ultimate modularity.

Authors:  Eugene V Koonin; Valerian V Dolja; Mart Krupovic
Journal:  Virology       Date:  2015-03-12       Impact factor: 3.616

8.  How many human proteoforms are there?

Authors:  Ruedi Aebersold; Jeffrey N Agar; I Jonathan Amster; Mark S Baker; Carolyn R Bertozzi; Emily S Boja; Catherine E Costello; Benjamin F Cravatt; Catherine Fenselau; Benjamin A Garcia; Ying Ge; Jeremy Gunawardena; Ronald C Hendrickson; Paul J Hergenrother; Christian G Huber; Alexander R Ivanov; Ole N Jensen; Michael C Jewett; Neil L Kelleher; Laura L Kiessling; Nevan J Krogan; Martin R Larsen; Joseph A Loo; Rachel R Ogorzalek Loo; Emma Lundberg; Michael J MacCoss; Parag Mallick; Vamsi K Mootha; Milan Mrksich; Tom W Muir; Steven M Patrie; James J Pesavento; Sharon J Pitteri; Henry Rodriguez; Alan Saghatelian; Wendy Sandoval; Hartmut Schlüter; Salvatore Sechi; Sarah A Slavoff; Lloyd M Smith; Michael P Snyder; Paul M Thomas; Mathias Uhlén; Jennifer E Van Eyk; Marc Vidal; David R Walt; Forest M White; Evan R Williams; Therese Wohlschlager; Vicki H Wysocki; Nathan A Yates; Nicolas L Young; Bing Zhang
Journal:  Nat Chem Biol       Date:  2018-02-14       Impact factor: 15.040

9.  An operational view of intercellular signaling pathways.

Authors:  Yaron E Antebi; Nagarajan Nandagopal; Michael B Elowitz
Journal:  Curr Opin Syst Biol       Date:  2017-02-24

Review 10.  The timetable of evolution.

Authors:  Andrew H Knoll; Martin A Nowak
Journal:  Sci Adv       Date:  2017-05-17       Impact factor: 14.136

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.