Literature DB >> 26709593

A Fast Air-dry Dropping Chromosome Preparation Method Suitable for FISH in Plants.

Lala Aliyeva-Schnorr1, Lu Ma2, Andreas Houben3.   

Abstract

Preparation of chromosome spreads is a prerequisite for the successful performance of fluorescence in situ hybridization (FISH). Preparation of high quality plant chromosome spreads is challenging due to the rigid cell wall. One of the approved methods for the preparation of plant chromosomes is a so-called drop preparation, also known as drop-spreading or air-drying technique. Here, we present a protocol for the fast preparation of mitotic chromosome spreads suitable for the FISH detection of single and high copy DNA probes. This method is an improved variant of the air-dry drop method performed under a relative humidity of 50%-55%. This protocol comprises a reduced number of washing steps making its application easy, efficient and reproducible. Obvious benefits of this approach are well-spread, undamaged and numerous metaphase chromosomes serving as a perfect prerequisite for successful FISH analysis. Using this protocol we obtained high-quality chromosome spreads and reproducible FISH results for Hordeum vulgare, H. bulbosum, H. marinum, H. murinum, H. pubiflorum and Secale cereale.

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Year:  2015        PMID: 26709593      PMCID: PMC4694022          DOI: 10.3791/53470

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  11 in total

1.  A drop-spreading technique to produce cytoplasm-free mitotic preparations from plants with small chromosomes.

Authors:  S C Andras; T P Hartman; J A Marshall; R Marchant; J B Power; E C Cocking; M R Davey
Journal:  Chromosome Res       Date:  1999       Impact factor: 5.239

2.  An air-drying technique for flattening chromosomes in mammalian oells grown in vitro.

Authors:  K H ROTHFELS; L SIMINOVITCH
Journal:  Stain Technol       Date:  1958-03

3.  Sensitive fluorescence in situ hybridization signal detection in maize using directly labeled probes produced by high concentration DNA polymerase nick translation.

Authors:  A Kato; P S Albert; J M Vega; J A Birchler
Journal:  Biotech Histochem       Date:  2006 Mar-Jun       Impact factor: 1.718

4.  Dynamics of chromosome spreading.

Authors:  J L Spurbeck; A R Zinsmeister; K J Meyer; S M Jalal
Journal:  Am J Med Genet       Date:  1996-02-02

5.  Efficient preparation of plant chromosomes for high-resolution scanning electron microscopy.

Authors:  R Martin; W Busch; R G Herrmann; G Wanner
Journal:  Chromosome Res       Date:  1994-09       Impact factor: 5.239

6.  Synteny between Brachypodium distachyon and Hordeum vulgare as revealed by FISH.

Authors:  Lu Ma; Giang T H Vu; Veit Schubert; Koichi Watanabe; Nils Stein; Andreas Houben; Ingo Schubert
Journal:  Chromosome Res       Date:  2010-11-23       Impact factor: 5.239

7.  Integrated karyotyping of sorghum by in situ hybridization of landed BACs.

Authors:  Jeong-Soon Kim; Kevin L Childs; M Nurul Islam-Faridi; Monica A Menz; Robert R Klein; Patricia E Klein; H James Price; John E Mullet; David M Stelly
Journal:  Genome       Date:  2002-04       Impact factor: 2.166

8.  Cytogenetic mapping with centromeric bacterial artificial chromosomes contigs shows that this recombination-poor region comprises more than half of barley chromosome 3H.

Authors:  Lala Aliyeva-Schnorr; Sebastian Beier; Miroslava Karafiátová; Thomas Schmutzer; Uwe Scholz; Jaroslav Doležel; Nils Stein; Andreas Houben
Journal:  Plant J       Date:  2015-10       Impact factor: 6.417

9.  Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize.

Authors:  Akio Kato; Jonathan C Lamb; James A Birchler
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-01       Impact factor: 11.205

10.  An easy "SteamDrop" method for high quality plant chromosome preparation.

Authors:  Ilya Kirov; Mikhail Divashuk; Katrijn Van Laere; Alexander Soloviev; Ludmila Khrustaleva
Journal:  Mol Cytogenet       Date:  2014-03-06       Impact factor: 2.009

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  10 in total

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Review 2.  Fluorescence in situ hybridization in plants: recent developments and future applications.

Authors:  Jiming Jiang
Journal:  Chromosome Res       Date:  2019-03-09       Impact factor: 5.239

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Journal:  Ann Bot       Date:  2020-06-01       Impact factor: 4.357

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Authors:  Susann Hesse; Antonio Manetto; Valentina Cassinelli; Jörg Fuchs; Lu Ma; Nada Raddaoui; Andreas Houben
Journal:  Chromosome Res       Date:  2016-04-19       Impact factor: 5.239

6.  Collinearity of homoeologous group 3 chromosomes in the genus Hordeum and Secale cereale as revealed by 3H-derived FISH analysis.

Authors:  Lala Aliyeva-Schnorr; Nils Stein; Andreas Houben
Journal:  Chromosome Res       Date:  2016-02-16       Impact factor: 5.239

7.  Application of a modified drop method for high-resolution pachytene chromosome spreads in two Phalaenopsis species.

Authors:  Yi-Tzu Kuo; Hui-Lan Hsu; Chih-Hsin Yeh; Song-Bin Chang
Journal:  Mol Cytogenet       Date:  2016-06-06       Impact factor: 2.009

8.  Cytogenetic and molecular characteristics of rye genome in octoploid triticale (× Triticosecale Wittmack).

Authors:  Elena V Evtushenko; Yulia A Lipikhina; Petr I Stepochkin; Alexander V Vershinin
Journal:  Comp Cytogenet       Date:  2019-12-16       Impact factor: 1.800

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Journal:  Front Plant Sci       Date:  2022-07-11       Impact factor: 6.627

10.  Prospects of telomere-to-telomere assembly in barley: Analysis of sequence gaps in the MorexV3 reference genome.

Authors:  Pavla Navrátilová; Helena Toegelová; Zuzana Tulpová; Yi-Tzu Kuo; Nils Stein; Jaroslav Doležel; Andreas Houben; Hana Šimková; Martin Mascher
Journal:  Plant Biotechnol J       Date:  2022-04-07       Impact factor: 13.263

  10 in total

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