Literature DB >> 26708960

Harnessing QbD, Programming Languages, and Automation for Reproducible Biology.

Michael I Sadowski1, Chris Grant1, Tim S Fell2.   

Abstract

Building robust manufacturing processes from biological components is a task that is highly complex and requires sophisticated tools to describe processes, inputs, and measurements and administrate management of knowledge, data, and materials. We argue that for bioengineering to fully access biological potential, it will require application of statistically designed experiments to derive detailed empirical models of underlying systems. This requires execution of large-scale structured experimentation for which laboratory automation is necessary. This requires development of expressive, high-level languages that allow reusability of protocols, characterization of their reliability, and a change in focus from implementation details to functional properties. We review recent developments in these areas and identify what we believe is an exciting trend that promises to revolutionize biotechnology.
Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

Keywords:  complexity; design of experiments; laboratory automation; programming languages; quality by design; reproducibility

Mesh:

Year:  2015        PMID: 26708960     DOI: 10.1016/j.tibtech.2015.11.006

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  13 in total

1.  Antha-Guided Automation of Darwin Assembly for the Construction of Bespoke Gene Libraries.

Authors:  P Handal-Marquez; M Koch; D Kestemont; S Arangundy-Franklin; V B Pinheiro
Journal:  Methods Mol Biol       Date:  2022

2.  When Is an In Silico Representation a Digital Twin? A Biopharmaceutical Industry Approach to the Digital Twin Concept.

Authors:  Rui M C Portela; Christos Varsakelis; Anne Richelle; Nikolaos Giannelos; Julia Pence; Sandrine Dessoy; Moritz von Stosch
Journal:  Adv Biochem Eng Biotechnol       Date:  2021       Impact factor: 2.635

3.  A transatlantic perspective on 20 emerging issues in biological engineering.

Authors:  Bonnie C Wintle; Christian R Boehm; Catherine Rhodes; Jennifer C Molloy; Piers Millett; Laura Adam; Rainer Breitling; Rob Carlson; Rocco Casagrande; Malcolm Dando; Robert Doubleday; Eric Drexler; Brett Edwards; Tom Ellis; Nicholas G Evans; Richard Hammond; Jim Haseloff; Linda Kahl; Todd Kuiken; Benjamin R Lichman; Colette A Matthewman; Johnathan A Napier; Seán S ÓhÉigeartaigh; Nicola J Patron; Edward Perello; Philip Shapira; Joyce Tait; Eriko Takano; William J Sutherland
Journal:  Elife       Date:  2017-11-14       Impact factor: 8.140

Review 4.  Organizing genome engineering for the gigabase scale.

Authors:  Bryan A Bartley; Jacob Beal; Jonathan R Karr; Elizabeth A Strychalski
Journal:  Nat Commun       Date:  2020-02-04       Impact factor: 14.919

Review 5.  Automation in the Life Science Research Laboratory.

Authors:  Ian Holland; Jamie A Davies
Journal:  Front Bioeng Biotechnol       Date:  2020-11-13

Review 6.  Harnessing the potential of machine learning for advancing "Quality by Design" in biomanufacturing.

Authors:  Ian Walsh; Matthew Myint; Terry Nguyen-Khuong; Ying Swan Ho; Say Kong Ng; Meiyappan Lakshmanan
Journal:  MAbs       Date:  2022 Jan-Dec       Impact factor: 5.857

7.  A synthetic biology standard for Chinese Hamster Ovary cell genome monitoring and contaminant detection by polymerase chain reaction.

Authors:  Alexander Templar; Douglas Marsh; Darren N Nesbeth
Journal:  Springerplus       Date:  2016-09-08

Review 8.  Bioinformatics for the synthetic biology of natural products: integrating across the Design-Build-Test cycle.

Authors:  Pablo Carbonell; Andrew Currin; Adrian J Jervis; Nicholas J W Rattray; Neil Swainston; Cunyu Yan; Eriko Takano; Rainer Breitling
Journal:  Nat Prod Rep       Date:  2016-05-17       Impact factor: 13.423

9.  High-Dimensional Design-Of-Experiments Extracts Small-Molecule-Only Induction Conditions for Dorsal Pancreatic Endoderm from Pluripotency.

Authors:  Michael A Bukys; Alexander Mihas; Krystal Finney; Katie Sears; Divya Trivedi; Yong Wang; Jose Oberholzer; Jan Jensen
Journal:  iScience       Date:  2020-07-04

Review 10.  Towards a widespread adoption of metabolic modeling tools in biopharmaceutical industry: a process systems biology engineering perspective.

Authors:  Anne Richelle; Blandine David; Didier Demaegd; Marianne Dewerchin; Romain Kinet; Angelo Morreale; Rui Portela; Quentin Zune; Moritz von Stosch
Journal:  NPJ Syst Biol Appl       Date:  2020-03-13
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