Literature DB >> 26699645

Structure-Based Mutagenesis of Sulfolobus Turreted Icosahedral Virus B204 Reveals Essential Residues in the Virion-Associated DNA-Packaging ATPase.

Nikki Dellas1, Jamie C Snyder2, Michael Dills2, Sheena J Nicolay2, Keshia M Kerchner2, Susan K Brumfield2, C Martin Lawrence3, Mark J Young4.   

Abstract

UNLABELLED: Sulfolobus turreted icosahedral virus (STIV), an archaeal virus that infects the hyperthermoacidophile Sulfolobus solfataricus, is one of the most well-studied viruses of the domain Archaea. STIV shares structural, morphological, and sequence similarities with viruses from other domains of life, all of which are thought to belong to the same viral lineage. Several of these common features include a conserved coat protein fold, an internal lipid membrane, and a DNA-packaging ATPase. B204 is the ATPase encoded by STIV and is thought to drive packaging of viral DNA during the replication process. Here, we report the crystal structure of B204 along with the biochemical analysis of B204 mutants chosen based on structural information and sequence conservation patterns observed among members of the same viral lineage and the larger FtsK/HerA superfamily to which B204 belongs. Both in vitro ATPase activity assays and transfection assays with mutant forms of B204 confirmed the essentiality of conserved and nonconserved positions. We also have identified two distinct particle morphologies during an STIV infection that differ in the presence or absence of the B204 protein. The biochemical and structural data presented here are not only informative for the STIV replication process but also can be useful in deciphering DNA-packaging mechanisms for other viruses belonging to this lineage. IMPORTANCE: STIV is a virus that infects a host from the domain Archaea that replicates in high-temperature, acidic environments. While STIV has many unique features, there exist several striking similarities between this virus and others that replicate in different environments and infect a broad range of hosts from Bacteria and Eukarya. Aside from structural features shared by viruses from this lineage, there exists a significant level of sequence similarity between the ATPase genes carried by these different viruses; this gene encodes an enzyme thought to provide energy that drives DNA packaging into the virion during infection. The experiments described here highlight the elements of this enzyme that are essential for proper function and also provide supporting evidence that B204 is present in the mature STIV virion.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID: 26699645      PMCID: PMC4810673          DOI: 10.1128/JVI.02435-15

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  36 in total

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Authors:  Detlef D Leipe; Yuri I Wolf; Eugene V Koonin; L Aravind
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2.  The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.

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Review 3.  On helicases and other motor proteins.

Authors:  Eric J Enemark; Leemor Joshua-Tor
Journal:  Curr Opin Struct Biol       Date:  2008-03-10       Impact factor: 6.809

4.  Development of a genetic system for the archaeal virus Sulfolobus turreted icosahedral virus (STIV).

Authors:  Jennifer Fulton Wirth; Jamie C Snyder; Rebecca A Hochstein; Alice C Ortmann; Deborah A Willits; Trevor Douglas; Mark J Young
Journal:  Virology       Date:  2011-04-15       Impact factor: 3.616

5.  In vivo assembly of an archaeal virus studied with whole-cell electron cryotomography.

Authors:  Chi-Yu Fu; Kang Wang; Lu Gan; Jason Lanman; Reza Khayat; Mark J Young; Grant J Jensen; Peter C Doerschuk; John E Johnson
Journal:  Structure       Date:  2010-12-08       Impact factor: 5.006

6.  Structure of A197 from Sulfolobus turreted icosahedral virus: a crenarchaeal viral glycosyltransferase exhibiting the GT-A fold.

Authors:  Eric T Larson; Dirk Reiter; Mark Young; C Martin Lawrence
Journal:  J Virol       Date:  2006-08       Impact factor: 5.103

7.  Atomic structure of the 75 MDa extremophile Sulfolobus turreted icosahedral virus determined by CryoEM and X-ray crystallography.

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Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-21       Impact factor: 11.205

8.  The structure of a thermophilic archaeal virus shows a double-stranded DNA viral capsid type that spans all domains of life.

Authors:  George Rice; Liang Tang; Kenneth Stedman; Francisco Roberto; Josh Spuhler; Eric Gillitzer; John E Johnson; Trevor Douglas; Mark Young
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-03       Impact factor: 11.205

9.  Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold.

Authors:  J E Walker; M Saraste; M J Runswick; N J Gay
Journal:  EMBO J       Date:  1982       Impact factor: 11.598

10.  MUSCLE: a multiple sequence alignment method with reduced time and space complexity.

Authors:  Robert C Edgar
Journal:  BMC Bioinformatics       Date:  2004-08-19       Impact factor: 3.169

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  4 in total

Review 1.  The enigmatic archaeal virosphere.

Authors:  David Prangishvili; Dennis H Bamford; Patrick Forterre; Jaime Iranzo; Eugene V Koonin; Mart Krupovic
Journal:  Nat Rev Microbiol       Date:  2017-11-10       Impact factor: 60.633

2.  Isolation and Characterization of Metallosphaera Turreted Icosahedral Virus, a Founding Member of a New Family of Archaeal Viruses.

Authors:  Cassia Wagner; Vijay Reddy; Francisco Asturias; Maryam Khoshouei; John E Johnson; Pilar Manrique; Jacob Munson-McGee; Wolfgang Baumeister; C Martin Lawrence; Mark J Young
Journal:  J Virol       Date:  2017-09-27       Impact factor: 5.103

Review 3.  Archaeal Viruses from High-Temperature Environments.

Authors:  Jacob H Munson-McGee; Jamie C Snyder; Mark J Young
Journal:  Genes (Basel)       Date:  2018-02-27       Impact factor: 4.096

4.  Vast diversity of prokaryotic virus genomes encoding double jelly-roll major capsid proteins uncovered by genomic and metagenomic sequence analysis.

Authors:  Natalya Yutin; Disa Bäckström; Thijs J G Ettema; Mart Krupovic; Eugene V Koonin
Journal:  Virol J       Date:  2018-04-10       Impact factor: 4.099

  4 in total

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